View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11356_high_45 (Length: 220)
Name: NF11356_high_45
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_high_45 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 26970614 - 26970760
Alignment:
| Q |
66 |
ctttctaagtttcaatattgtactctatgtaatagagaatacaatgacaacatattttccgagaaacattgtcttcggtagttcctcgatatgtaatctt |
165 |
Q |
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| T |
26970614 |
ctttctaagtttcaatattgtacactatgtaatagagaatacaatgacaacatgttttccgagaaacattgtcctcggtagttcctcgatatgtaatctt |
26970713 |
T |
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| Q |
166 |
gaaaactgtgttaaactgattatgcagctggtggagcagagattcct |
212 |
Q |
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| T |
26970714 |
gaaaaccgtgttaaactgattatgtagctggtggagcagagattcct |
26970760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 33239754 - 33239831
Alignment:
| Q |
66 |
ctttctaagtttcaatattgtactctatgtaatagagaatacaatgacaacatattttccgagaaacattgtcttcggta |
145 |
Q |
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| T |
33239754 |
ctttctaaatttcaatattgta-tc-atgtaataaagaatacaatgacaacatgtattccgagaaacattgtcctcggta |
33239831 |
T |
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Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 41101151 - 41101002
Alignment:
| Q |
66 |
ctttctaagtttcaatattgtactcta---tgtaatagagaatacaatgacaacatattttccgagaaacattgtcttcggtagttcctcgatatgtaat |
162 |
Q |
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| T |
41101151 |
ctttctaagtttcaatattgtacactactatgtaatagagaatacagtgacaacatgttttccgagaaacattgtcctcggtagttccttgatatgccat |
41101052 |
T |
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| Q |
163 |
cttgaaaactgtgttaaactgattatgcagctggtggagcagagattcct |
212 |
Q |
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| T |
41101051 |
cttgaaaaccgtgttaaactgattatgcagctgccggagcagagattcct |
41101002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 41101221 - 41101173
Alignment:
| Q |
5 |
gagagagagcatggtgtcgcagttgagagagaagatggagcacgttcag |
53 |
Q |
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| T |
41101221 |
gagagacagcatggtgtcccagttgagagagaagatggagcacgttcag |
41101173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 39577481 - 39577387
Alignment:
| Q |
95 |
taatagagaatacaatgacaacatattttccgagaaacattgtcttcggtagttcctcgatatgtaatcttgaaaactgtgttaaactgattatg |
189 |
Q |
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| T |
39577481 |
taatagagaatacaatgacaacatgtattccgagaaacattgtcctcggtagttcctcggtatgtaatcttgaaaactgtgttaaattgattatg |
39577387 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 15481029 - 15481115
Alignment:
| Q |
91 |
tatgtaatagagaatacaatgacaacatattttccgagaaacattgtcttc--ggtagttcctcgatatgtaatcttgaaaactgtg |
175 |
Q |
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| T |
15481029 |
tatgtaatagagaatataatgacaacatgtttttcgaaaaacattgtcctcttggtagttcctcggtatgtaatcttgaaaactgtg |
15481115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 212
Target Start/End: Original strand, 21926543 - 21926647
Alignment:
| Q |
108 |
aatgacaacatattttccgagaaacattgtcttcggtagttcctcgatatgtaatcttgaaaactgtgttaaactgattatgcagctggtggagcagaga |
207 |
Q |
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||||||||||| ||||||| |||||| || |||||||||||||| ||| |||||| |||| |||| || ||||||||||||| || | |||||||| |
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| T |
21926543 |
aatgacaacatgcattccgaggaacattttcctcggtagttcctcggtatttaatctagaaaggcgtgtcaatctgattatgcagcaggagcagcagaga |
21926642 |
T |
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| Q |
208 |
ttcct |
212 |
Q |
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||||| |
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| T |
21926643 |
ttcct |
21926647 |
T |
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