View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11356_high_5 (Length: 728)

Name: NF11356_high_5
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11356_high_5
NF11356_high_5
[»] chr1 (1 HSPs)
chr1 (22-709)||(36376818-36377492)


Alignment Details
Target: chr1 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 22 - 709
Target Start/End: Original strand, 36376818 - 36377492
Alignment:
Q  22 gcataagcagaaaagcataa---ccattaatatacatatataaggtagctaactactaaggtagcaactagttgttattcttttgattaagcctagctgc 118  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  36376818 gcataagcagaaaagcataataaccattaatatacatatataaggtagctaactacttaggtagcaactagttgttattcttttggttaagcctagctgc 36376917  T
Q  119 ggctgccattgatgcagacactcctccaggatgagtagtgagatatggatcatttctcatttctgcacccgtcaccccttcagcgtctctccttgtcgct 218  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  36376918 ggctgccattgatgctgacactcctccaggatgagtagtgagatatggatcatttctcatttctgcacccgtcaccccttcggcatctctccttgtcgct 36377017  T
Q  219 gctctatctgccggtaactttgtagtcgcgtcctgcatcattataacaattcaaatatattagcaacctaaaattcttgtatgtgcagatagtaaaaaat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||| |||||||||||||    
T  36377018 gctctatctgccggtaactttgtagtcgcgtcctgcatcattataacaattcaaatata------acctaaaattcttgtatgtgcggatagtaaaaaat 36377111  T
Q  319 aactgcaaagatgtttgatgttggagcgcagatttaaatctgcaattctgcactttcaagtatttagtgtgtataacttttgtagcaagactctttaaat 418  Q
    |||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36377112 aactgcaaagatgtttgatgttggagagcggatttaaatctgcaactctgcactttcaagtatttagtgtgtataacttttgttgcaagactctttaaat 36377211  T
Q  419 gtnnnnnnntgtctggtatgtaccgcaagaatatcaccaagtttggtcttgtcctcttcctttgtggttcgagcattgagagttgcggctgattgtgctg 518  Q
    ||          |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36377212 gt----------ctggtatgtaccgcaagaatatcaccgagtttggtcttgtcctcttcctttgtggttcgagcattgagagttgcagctgattgtgctg 36377301  T
Q  519 ccgcggcaacacctccagggacgatgttagtgcgccctgtggctctgacttctgctgcttgaatagcagctgcatcgctccactcaacaggtttctgccc 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36377302 ccgcggcaacacctccagggacgatgttagtgcgccctgtggctctgacttctgctgcttgaatagcagctgcatcgctccactcaacaggtttctgccc 36377401  T
Q  619 tgctgtcaaagcagtggcttcaagtgcttctcctatggttacccctccatcagctccagcgctcatgtctttaactagagaagctggtgtc 709  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36377402 tgctgtcaaagcagtggcttcaagtgcttctcctatggttacccctccatcagctccagcgctcatgtctttaactagagaagctggtgtc 36377492  T

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