View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11356_high_7 (Length: 598)
Name: NF11356_high_7
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 18 - 584
Target Start/End: Original strand, 38146319 - 38146885
Alignment:
| Q |
18 |
aaaatgagtgaattttcagaatctgatagcccttttccacatagaaatggaacattgtataaaattcagtacttgtctatatggcaagagggtgacaaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38146319 |
aaaatgagtgaattttcagaatctgatagcccttttccacatagaaatggaacattgtataaaattcagtacttgtctatatggcaagagggtgacaaga |
38146418 |
T |
|
| Q |
118 |
atgttgcaaagcatgtagactggattaggaagctttataactatatgactccttatgtgtctaaatttccaagggaagcttatgtgaattatagggatct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38146419 |
atgttgcaaagcatgtagactggattaggaagctttataactatatgactccttatgtgtctaaatttccaagggaagcttatgtgaattatagggatct |
38146518 |
T |
|
| Q |
218 |
tgatttgggaattaactctaagaatagtacaagctatatagaagcaactggttggggttataggtattttaagggtaattttaacaagttggttcagata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38146519 |
tgatttgggaattaactctaagaatagtacaagctatatagaagcaactggttggggttataggtattttaagggtaattttaacaagttggttcagata |
38146618 |
T |
|
| Q |
318 |
aagactagagtggatcctgaaaatgtgtttaggcatgaacaaagtattccaccacttccaatataaaaataaaatgtcaaaacacaagaaaaggaaaata |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38146619 |
aagactagagtggatcctgaaaatgtgtttaggcatgaacaaagtattccaccacttccaatataaaaataaaatgtcaaaacacaagaaaaggaaaata |
38146718 |
T |
|
| Q |
418 |
agacactttgctgctagtatcagaagaatggtatttatgaatttgttatggaaggggtcattatctagtttagaaaaataaagatacatctaggtttgtt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38146719 |
agacactttgctgctagtatcagaagaatggtatttatgaatttgttatggaaggggtcattatctagtttagaaaaataaagatacatctaggtttgtt |
38146818 |
T |
|
| Q |
518 |
acttttattgtattattaatgttgtaagatagtactgattaagtgcctaattgtaatgtgtgatgtc |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
38146819 |
acttttattgtattattaatgttgtaagatagtactgattaagtgcctaattgtaatgtgggatgtc |
38146885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 3e-71; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 30 - 370
Target Start/End: Complemental strand, 11786489 - 11786149
Alignment:
| Q |
30 |
ttttcagaatctgatagcccttttccacatagaaatggaacattgtataaaattcagtacttgtctatatggcaagagggtgacaagaatgttgcaaagc |
129 |
Q |
| |
|
||||| |||||||||| ||||||||| || |||||||||||| | || ||||||||||| || || | |||||||| || |||||||||| | |||||| |
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|
| T |
11786489 |
ttttcggaatctgatatcccttttcctcacagaaatggaacactttacaaaattcagtatttaactctttggcaagatggagacaagaatgcttcaaagc |
11786390 |
T |
|
| Q |
130 |
atgtagactggattaggaagctttataactatatgactccttatgtgtctaaatttccaagggaagcttatgtgaattatagggatcttgatttgggaat |
229 |
Q |
| |
|
|||| || ||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||| |
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|
| T |
11786389 |
atgttgattggatcaggaagctttataactacatgaccccttatgtgtctaagtttccaagggaagcatatgtgaactatagagatcttgatttgggaat |
11786290 |
T |
|
| Q |
230 |
taactctaagaatagtacaagctatatagaagcaactggttggggttataggtattttaagggtaattttaacaagttggttcagataaagactagagtg |
329 |
Q |
| |
|
|| |||||||||||||||| |||| |||||||| ||||||| | | |||||| || | |||||| || | |||||| | || ||||||| |||| |
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| T |
11786289 |
gaataagaagaatagtacaagctttatacaagcaacttcttggggtaacatgtatttcaaagataatttcaataggttggtgaaaattaagactaaagtg |
11786190 |
T |
|
| Q |
330 |
gatcctgaaaatgtgtttaggcatgaacaaagtattccacc |
370 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||||||||| |
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|
| T |
11786189 |
gatcctgaaaatgtgttcaggcatgagcagagtattccacc |
11786149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 11934565 - 11934638
Alignment:
| Q |
159 |
tatatgactccttatgtgtctaaatttccaagggaagcttatgtgaattatagggatcttgatttgggaattaa |
232 |
Q |
| |
|
||||||||||||| |||||| || |||||| || |||| | | ||||||| ||||||||||||||||||||| |
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|
| T |
11934565 |
tatatgactccttttgtgtccaagaatccaagagaggctttttttaattataaggatcttgatttgggaattaa |
11934638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 11947786 - 11947859
Alignment:
| Q |
159 |
tatatgactccttatgtgtctaaatttccaagggaagcttatgtgaattatagggatcttgatttgggaattaa |
232 |
Q |
| |
|
||||||||||||| |||||| || |||||| || |||| | | ||||||| ||||||||||||||||||||| |
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|
| T |
11947786 |
tatatgactccttttgtgtccaagaatccaagagaggctttttttaattataaggatcttgatttgggaattaa |
11947859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 516
Target Start/End: Complemental strand, 36161228 - 36161175
Alignment:
| Q |
463 |
ttatggaaggggtcattatctagtttagaaaaataaagatacatctaggtttgt |
516 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| ||||| || ||| ||||| |
|
|
| T |
36161228 |
ttatgaaaggggtcattgtctagtttagaaaaatagagatatatttagatttgt |
36161175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 2e-54; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 209 - 374
Target Start/End: Complemental strand, 26029073 - 26028906
Alignment:
| Q |
209 |
tagggatcttgatttgggaattaactctaagaatagtacaagctatatagaagcaactggttggggttataggtattttaagggtaattttaacaagttg |
308 |
Q |
| |
|
|||||||||||||||||| |||| | | |||||||||||||||||||||||||||| || |||||| |||||||||||||| |||||||| ||||||||| |
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|
| T |
26029073 |
tagggatcttgatttggggattagccccaagaatagtacaagctatatagaagcaagtgtttggggatataggtattttaacggtaatttcaacaagttg |
26028974 |
T |
|
| Q |
309 |
gttcagataaagactagagtggatcctgaaaatgtgtttaggcatgaac--aaagtattccaccactt |
374 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||| |
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|
| T |
26028973 |
gttaagataaagactagagtggatcctgaaaatgtgttcaggcatgaacatatagtattccaccactt |
26028906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 26039693 - 26039551
Alignment:
| Q |
23 |
gagtgaattttcagaatctgatagcccttttccacatagaaatggaacattgtataaaattcagtacttgtctatatggcaagagggtgacaagaatgtt |
122 |
Q |
| |
|
|||| |||||||||||| |||||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||| || |||||||||| | |
|
|
| T |
26039693 |
gagtcaattttcagaatatgatagccgttttcaccatagaaatgaaatgttgtataaaattcagtacttgtctatatggcaagatggagacaagaatgct |
26039594 |
T |
|
| Q |
123 |
gcaaagcatgtagactggattaggaagctttataactatatga |
165 |
Q |
| |
|
||||| ||| |||| |||||||||||||||||||||||||||| |
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|
| T |
26039593 |
gcaaatcatatagattggattaggaagctttataactatatga |
26039551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 26029230 - 26029098
Alignment:
| Q |
21 |
atgagtgaattttcagaatctgatagcccttttccacatagaaatggaacattgtataaaattcagtacttgtctatatggcaagagggtgacaagaatg |
120 |
Q |
| |
|
|||||| | ||||||||||||||||| |||||||| ||||||||||||||| | |||||||||| ||||||||| |||||||||| ||||||||||||| |
|
|
| T |
26029230 |
atgagtcagttttcagaatctgatagaccttttcctcatagaaatggaacact--ataaaattcaatacttgtctgtatggcaagatggtgacaagaatg |
26029133 |
T |
|
| Q |
121 |
ttgcaaagcatgtagactggattaggaagctttat |
155 |
Q |
| |
|
||||| |||| |||| ||||| ||||||| |||| |
|
|
| T |
26029132 |
ctgcaaggcatatagattggatcaggaagcattat |
26029098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 245 - 386
Target Start/End: Complemental strand, 26039500 - 26039359
Alignment:
| Q |
245 |
tacaagctatatagaagcaactggttggggttataggtattttaagggtaattttaacaagttggttcagataaagactagagtggatcctgaaaatgtg |
344 |
Q |
| |
|
||||||||| | |||||||| || ||| || |||||||||||||||| |||||| || | ||| ||| || ||||||||||||||||||||||||||| | |
|
|
| T |
26039500 |
tacaagctacacagaagcaagtgtttgaggatataggtattttaaggataatttcaaaaggttagttaaggtaaagactagagtggatcctgaaaatgag |
26039401 |
T |
|
| Q |
345 |
tttaggcatgaacaaagtattccaccacttccaatataaaaa |
386 |
Q |
| |
|
|| ||||||||||| ||| || | |||||||||||| |||| |
|
|
| T |
26039400 |
ttcaggcatgaacagagtgttaaatcacttccaatatgaaaa |
26039359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 516
Target Start/End: Complemental strand, 26039293 - 26039249
Alignment:
| Q |
472 |
gggtcattatctagtttagaaaaataaagatacatctaggtttgt |
516 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||| ||||| |
|
|
| T |
26039293 |
gggtcattgtctagtttagaaaaatagagatacatttagatttgt |
26039249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 210 - 371
Target Start/End: Original strand, 50898167 - 50898329
Alignment:
| Q |
210 |
agggatcttgatttgggaattaactctaagaatagtacaagctatatagaagcaactggttggggttataggtattttaag-ggtaattttaacaagttg |
308 |
Q |
| |
|
|||||| ||||||||| |||||| ||||| || ||||||||||| |||||||||| || |||||||||||||||||||||| | |||||| ||||||||| |
|
|
| T |
50898167 |
agggatattgatttggcaattaaatctaataacagtacaagctacatagaagcaagtgcttggggttataggtattttaagtgttaatttcaacaagttg |
50898266 |
T |
|
| Q |
309 |
gttcagataaagactagagtggatcctgaaaatgtgtttaggcatgaacaaagtattccacca |
371 |
Q |
| |
|
||| ||||||| |||| | ||||||||||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
50898267 |
gttaagataaaaactataatggatcctgaatatgtgttaaggcatgaaccaagtattccacca |
50898329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 268 - 375
Target Start/End: Original strand, 50904800 - 50904907
Alignment:
| Q |
268 |
gttggggttataggtattttaagggtaattttaacaagttggttcagataaagactagagtggatcctgaaaatgtgtttaggcatgaacaaagtattcc |
367 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||| || |||||||| ||||||| |||| ||||||||||||||| |
|
|
| T |
50904800 |
gttggggttataggtattttaagagtaatttcaacaagttggttaagataaagactagaatgaatcctgaatatgtgttcaggcgtgaacaaagtattcc |
50904899 |
T |
|
| Q |
368 |
accacttc |
375 |
Q |
| |
|
|||||||| |
|
|
| T |
50904900 |
accacttc |
50904907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 250 - 376
Target Start/End: Complemental strand, 40587377 - 40587251
Alignment:
| Q |
250 |
gctatatagaagcaactggttggggttataggtattttaagggtaattttaacaagttggttcagataaagactagagtggatcctgaaaatgtgtttag |
349 |
Q |
| |
|
||||||| |||||| || |||||| |||||||||||||||| |||||| ||||||||| || |||||||| ||||||||||||||||||||||||| || |
|
|
| T |
40587377 |
gctatattgaagcatgtgcttggggatataggtattttaaggataatttcaacaagttgattaagataaagtctagagtggatcctgaaaatgtgttcag |
40587278 |
T |
|
| Q |
350 |
gcatgaacaaagtattccaccacttcc |
376 |
Q |
| |
|
||| ||| | ||||||||||||||||| |
|
|
| T |
40587277 |
gcaggaatagagtattccaccacttcc |
40587251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 2197273 - 2197324
Alignment:
| Q |
18 |
aaaatgagtgaattttcagaatctgatagcccttttccacatagaaatggaa |
69 |
Q |
| |
|
|||||||||||| ||||||||||||| | |||||||||||| ||||| |||| |
|
|
| T |
2197273 |
aaaatgagtgaaatttcagaatctgaaatcccttttccacacagaaaaggaa |
2197324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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