View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11356_low_16 (Length: 462)
Name: NF11356_low_16
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Complemental strand, 48100374 - 48099940
Alignment:
| Q |
19 |
ccactgtcaacaagtgaatcaccaaatacaaagaaagccctttgcttggaatcagcatcagctgggacaatgaccccaattactaagaatataccaaaag |
118 |
Q |
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| T |
48100374 |
ccactgtcaacaagtgaatcaccaaatacaaagaaagccctttgcttggaatcagcatcagctgggacaatgaccccaattactaagaatataccaaaag |
48100275 |
T |
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| Q |
119 |
atatcatcaaaggaacaaaagatgaaggaattgccatttgccttgagttagttgaaaagaattaacctttttcaatatgtgtattggatacatcaattc- |
217 |
Q |
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| T |
48100274 |
atatcatcaaaggaacaaaagatgaaggatttgccatttgccttgagttagttgaaaagaattaacctttttcaatatgtgtattggatacatcaatttg |
48100175 |
T |
|
| Q |
218 |
atgcctttttatagccacnnnnnnnaaacaataaaagagtgaattttaggtagaatgaactttttggtggtatttaattgaaatgaattgtttcaagttg |
317 |
Q |
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| T |
48100174 |
atgcctttttatagccactttttttaaacaataaaagagtgaattttaggtagaatgaactttttggtggtatttaattgaaatgaattgtttcaagttg |
48100075 |
T |
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| Q |
318 |
catgttttctagttttgaaagtgcatgacatgtgaaattggttgaatggaaatgcaataagaaataatttccgccgcccaaaagcatacaaaaaatgtaa |
417 |
Q |
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| T |
48100074 |
catgttttctagttttgaaagtgcatgacatgtgaaattggttgaatggaaatgcaataagaaataatttccgccgcccaaaagcatacaaaaaatgtaa |
48099975 |
T |
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| Q |
418 |
gaaggaaaaagtgaaaacaaggtatgtttcctatg |
452 |
Q |
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| T |
48099974 |
gaaggaaaaagtgaaaacaaggtatgtttcctatg |
48099940 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 29769816 - 29769853
Alignment:
| Q |
19 |
ccactgtcaacaagtgaatcaccaaatacaaagaaagc |
56 |
Q |
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| T |
29769816 |
ccactgtcaacaagtgagtcaccaaaaacaaagaaagc |
29769853 |
T |
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