View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11356_low_2 (Length: 786)

Name: NF11356_low_2
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11356_low_2
NF11356_low_2
[»] scaffold0144 (2 HSPs)
scaffold0144 (12-562)||(35447-35997)
scaffold0144 (663-740)||(4160-4237)
[»] chr6 (29 HSPs)
chr6 (6-306)||(16656225-16656525)
chr6 (6-306)||(16795376-16795676)
chr6 (6-306)||(16869639-16869939)
chr6 (609-769)||(16870243-16870403)
chr6 (303-516)||(16870011-16870215)
chr6 (608-740)||(16655784-16655916)
chr6 (621-752)||(16778886-16779017)
chr6 (608-752)||(16794920-16795064)
chr6 (619-741)||(16784993-16785115)
chr6 (635-769)||(17095682-17095816)
chr6 (6-145)||(17067868-17068007)
chr6 (303-514)||(16795093-16795304)
chr6 (608-740)||(17067203-17067335)
chr6 (331-562)||(16655897-16656128)
chr6 (428-562)||(16785107-16785241)
chr6 (609-740)||(16558391-16558520)
chr6 (6-145)||(16985822-16985961)
chr6 (6-145)||(16786330-16786469)
chr6 (608-769)||(16985140-16985298)
chr6 (6-132)||(16779552-16779678)
chr6 (303-516)||(16779057-16779270)
chr6 (663-740)||(18808544-18808621)
chr6 (206-306)||(16785438-16785538)
chr6 (328-375)||(16985472-16985519)
chr6 (691-740)||(16841550-16841599)
chr6 (328-384)||(17067506-17067562)
chr6 (335-374)||(17096945-17096984)
chr6 (691-740)||(16836439-16836488)
chr6 (477-554)||(17067324-17067401)
[»] scaffold0133 (10 HSPs)
scaffold0133 (608-752)||(10558-10702)
scaffold0133 (608-740)||(6222-6354)
scaffold0133 (7-131)||(6856-6980)
scaffold0133 (303-375)||(16093-16165)
scaffold0133 (303-374)||(6523-6594)
scaffold0133 (6-145)||(11217-11356)
scaffold0133 (701-752)||(15855-15906)
scaffold0133 (338-516)||(10741-10919)
scaffold0133 (217-306)||(11023-11112)
scaffold0133 (218-306)||(6663-6751)
[»] scaffold0256 (3 HSPs)
scaffold0256 (618-748)||(6873-7003)
scaffold0256 (6-145)||(7522-7661)
scaffold0256 (257-306)||(7322-7371)
[»] chr8 (3 HSPs)
chr8 (603-758)||(13375786-13375941)
chr8 (51-145)||(13376454-13376548)
chr8 (257-306)||(13376245-13376294)
[»] chr3 (7 HSPs)
chr3 (608-752)||(38941658-38941802)
chr3 (6-131)||(38941013-38941138)
chr3 (303-562)||(38941421-38941677)
chr3 (603-739)||(7055578-7055717)
chr3 (7-145)||(7054927-7055065)
chr3 (303-384)||(38943173-38943254)
chr3 (329-565)||(7055369-7055605)
[»] chr2 (2 HSPs)
chr2 (694-749)||(20151574-20151629)
chr2 (472-549)||(20152907-20152984)
[»] scaffold0511 (2 HSPs)
scaffold0511 (676-740)||(3535-3599)
scaffold0511 (675-740)||(7089-7154)
[»] scaffold0230 (1 HSPs)
scaffold0230 (675-740)||(2401-2466)


Alignment Details
Target: scaffold0144 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 12 - 562
Target Start/End: Complemental strand, 35997 - 35447
Alignment:
Q  12 agagatgctaccacaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaaggagga 111  Q
    |||||||||||||||||||||| | || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35997 agagatgctaccacaacttttaaatttagatataacaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaaggagga 35898  T
Q  112 aatgaagagttattgaagtccattgttaacaacagtaatcttaagtcactttccatacgcaaattttctagactcgtggaattacctggtacgtttgaac 211  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35897 aattaagagttattgaagtccattgttaacaacagtaatcttaagtcactttccatacgcaaattttctagactcatggaattacctggtacgtttgaac 35798  T
Q  212 ttggcactcttagtgctttagaatctcttacaattgacagctgtaatgaaatcgagtcattatcagagcagttgttgcaaagtttgagttctcttaagac 311  Q
    | |||||||||||||  ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35797 tcggcactcttagtggcttagaatctcttacaattgaccggtgtaatgaaatcgagtcattatcagagcagttgttgcaaggtttgagttctcttaagac 35698  T
Q  312 actttatatccatgattgtccacagtttgtttttccacataacatgaccaatctaacttccctttgtgaactgattgtctccgggggtgatgaaaaagta 411  Q
    |||  ||||    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||    
T  35697 actaaatattggaggctgtccacagtttgtttttccacataacatgaccaatctaacttccctttgtgaactgattgtctcaaggggtgatgaaaaaata 35598  T
Q  412 ctagaaagcttagaagacatcccctcactgcaatctttgtatctgaatcatttcctttctctaagatcctttccagactgtttgggtgtaatgacttctc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  35597 ctagaaagcttagaagacatcccctcactgcaatctttgtatctgaatcatttcctttctctaagatcctttccagactgtttgggtgccatgacttctc 35498  T
Q  512 ttcaaaatttacaaatttacaggtttccaaagttaagttcactactagaca 562  Q
    ||||||||||| ||||||| || |||||||||||||||||||||| |||||    
T  35497 ttcaaaatttaaaaatttatagttttccaaagttaagttcactaccagaca 35447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 663 - 740
Target Start/End: Original strand, 4160 - 4237
Alignment:
Q  663 attgttgattgccctaagttggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct 740  Q
    |||||||  ||||||| |||||||||| ||||||||| |||||  || |||||||||||||||||| ||||| |||||    
T  4160 attgttggatgccctatgttggagaagcgatgcaagaaaggaaccggggaagattggcataagatatctcacgttcct 4237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 205; Significance: 1e-111; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 6 - 306
Target Start/End: Complemental strand, 16656525 - 16656225
Alignment:
Q  6 aggagcagagatgctaccacaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaa 105  Q
    ||||| |||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  16656525 aggagtagagatgctaccacaacttttaaatttagatataagaaatgtccccaaacttacattgccaccccttgcatctgttaaatcactttttgctaaa 16656426  T
Q  106 ggaggaaatgaagagttattgaagtccattgttaacaacagtaatcttaagtcactttccatacgcaaattttctagactcgtggaattacctggtacgt 205  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    ||||||| | |||| | ||||||||||||||||    
T  16656425 ggaggaaatgaagagttattgaagtctattgttaacaacagtaatcttaagtcactttccatatctgaattttccaaactcattgaattacctggtacgt 16656326  T
Q  206 ttgaacttggcactcttagtgctttagaatctcttacaattgacagctgtaatgaaatcgagtcattatcagagcagttgttgcaaagtttgagttctct 305  Q
    ||||| | |||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||| || |||||| ||||||| |||||    
T  16656325 ttgaattcggcactcttagtgcattagaatctcttacaattcactgctgtaatgaaatcgagtcattatcagagcacttattgcaaggtttgaggtctct 16656226  T
Q  306 t 306  Q
    |    
T  16656225 t 16656225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 6 - 306
Target Start/End: Complemental strand, 16795676 - 16795376
Alignment:
Q  6 aggagcagagatgctaccacaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaa 105  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  16795676 aggagtagagatgctaccacaacttttagagttagatataagaaatgttcccaaacttacattgccaccccttccatctgttaaatcactttgtgctgaa 16795577  T
Q  106 ggaggaaatgaagagttattgaagtccattgttaacaacagtaatcttaagtcactttccatacgcaaattttctagactcgtggaattacctggtacgt 205  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||   |||||| | ||||||  |||||||||| |||| |    
T  16795576 ggaggaaatgaagagttattgaagtctattgttaacaacagtaatcttaaatcactttacatattaaaatttgccagactcaaggaattacctagtacat 16795477  T
Q  206 ttgaacttggcactcttagtgctttagaatctcttacaattgacagctgtaatgaaatcgagtcattatcagagcagttgttgcaaagtttgagttctct 305  Q
     |||||| |||||||||||||| ||||||| ||||  |||| |  ||||| ||||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  16795476 ctgaactcggcactcttagtgccttagaatttcttggaattcaaggctgtgatgaaatggagtcattaacagagcagttgttgcaaggtttgagttctct 16795377  T
Q  306 t 306  Q
    |    
T  16795376 t 16795376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 6 - 306
Target Start/End: Original strand, 16869639 - 16869939
Alignment:
Q  6 aggagcagagatgctaccacaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaa 105  Q
    ||||| |||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||    
T  16869639 aggagtagagatgctaccacaacttttaaagttacatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcattttatgctgaa 16869738  T
Q  106 ggaggaaatgaagagttattgaagtccattgttaacaacagtaatcttaagtcactttccatacgcaaattttctagactcgtggaattacctggtacgt 205  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||  ||||||| | |||||| ||||||||||||||||||    
T  16869739 ggaggcaatgaagagttattgaagtccattgttgacaacagtaatcttaagtcacttcacatatccaaatttgccagactcatggaattacctggtacgt 16869838  T
Q  206 ttgaacttggcactcttagtgctttagaatctcttacaattgacagctgtaatgaaatcgagtcattatcagagcagttgttgcaaagtttgagttctct 305  Q
    ||||||| |||||| ||||||| ||||||   |||  ||||||    ||| ||||||| ||||||||||||||  | ||||||||| |||||||||||||    
T  16869839 ttgaactcggcacttttagtgccttagaagagcttcgaattgaatattgtgatgaaatggagtcattatcagataaattgttgcaaggtttgagttctct 16869938  T
Q  306 t 306  Q
    |    
T  16869939 t 16869939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 609 - 769
Target Start/End: Original strand, 16870243 - 16870403
Alignment:
Q  609 ttaaggtctctaccagaaaactttcagcaactccaaaacttgcaagagttaaggattgttgattgccctaagttggagaagagatgcaagagaggaatag 708  Q
    ||||| || |||||||| |||||||||||||||  |||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16870243 ttaagttcactaccagacaactttcagcaactcacaaacttgatggagttaagtattgttgattgccctaagttggagaagagatgcaagagaggaatag 16870342  T
Q  709 gtgaagattggcataagatagctcacattcctcaagttgaattggaatctgatgaaaaacc 769  Q
    |||||||||||||||||||||||||||||||| || || | |||||||||||| |||||||    
T  16870343 gtgaagattggcataagatagctcacattcctgaattttatttggaatctgataaaaaacc 16870403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 303 - 516
Target Start/End: Original strand, 16870011 - 16870215
Alignment:
Q  303 tcttaagacactttatatccatgattgtccacagtttgtttttccacataacatgaccaatctaacttccctttgtgaactgattgtctccgggggtgat 402  Q
    |||||||||||||||||||   || ||||||||||||||||||||||||||||||| |||||||||||||||         |||||||||||||| ||||    
T  16870011 tcttaagacactttatatcagcgactgtccacagtttgtttttccacataacatgaacaatctaacttccct---------gattgtctccggggttgat 16870101  T
Q  403 gaaaaagtactagaaagcttagaagacatcccctcactgcaatctttgtatctgaatcatttcctttctctaagatcctttccagactgtttgggtgtaa 502  Q
    ||||||||||||||||||||||||| |||||||||||| |||  ||||| |||| |  ||||||||||||||| | |||| |||||||||||||||   |    
T  16870102 gaaaaagtactagaaagcttagaaggcatcccctcactacaaagtttgtctctgcaaaatttcctttctctaacagccttgccagactgtttgggtacca 16870201  T
Q  503 tgacttctcttcaa 516  Q
    ||||||||||||||    
T  16870202 tgacttctcttcaa 16870215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 608 - 740
Target Start/End: Complemental strand, 16655916 - 16655784
Alignment:
Q  608 gttaaggtctctaccagaaaactttcagcaactccaaaacttgcaagagttaaggattgttgattgccctaagttggagaagagatgcaagagaggaata 707  Q
    |||||| || |||||||| ||||||||||||||||||||||||||| ||||||| |||  || |||||||||||||||||||||||||||||||||||||    
T  16655916 gttaagttcactaccagacaactttcagcaactccaaaacttgcaaaagttaagaatttgtggttgccctaagttggagaagagatgcaagagaggaata 16655817  T
Q  708 ggtgaagattggcataagatagctcacattcct 740  Q
    |||||||||||||||||||||||||||||||||    
T  16655816 ggtgaagattggcataagatagctcacattcct 16655784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 621 - 752
Target Start/End: Complemental strand, 16779017 - 16778886
Alignment:
Q  621 ccagaaaactttcagcaactccaaaacttgcaagagttaaggattgttgattgccctaagttggagaagagatgcaagagaggaataggtgaagattggc 720  Q
    ||||| ||||||||||||||||||||||||||| | ||||| |||| |  ||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  16779017 ccagacaactttcagcaactccaaaacttgcaatatttaagtattggtcgttgtcctaagttggagaagagatgcaagagaggaaaaggtgaagattggc 16778918  T
Q  721 ataagatagctcacattcctcaagttgaattg 752  Q
    ||||||||||||||||||||||||||||||||    
T  16778917 ataagatagctcacattcctcaagttgaattg 16778886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 608 - 752
Target Start/End: Complemental strand, 16795064 - 16794920
Alignment:
Q  608 gttaaggtctctaccagaaaactttcagcaactccaaaacttgcaagagttaaggattgttgattgccctaagttggagaagagatgcaagagaggaata 707  Q
    |||||| || |||||||| |||||||||||||||| |||||||||||||||||| |||| | ||||||||  |||||||| ||||||||||||||||| |    
T  16795064 gttaagttcactaccagacaactttcagcaactccgaaacttgcaagagttaagtattgattattgccctttgttggagatgagatgcaagagaggaaaa 16794965  T
Q  708 ggtgaagattggcataagatagctcacattcctcaagttgaattg 752  Q
    ||||||||||||||||||||||||||| ||||| || ||||||||    
T  16794964 ggtgaagattggcataagatagctcacgttcctgaatttgaattg 16794920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 619 - 741
Target Start/End: Complemental strand, 16785115 - 16784993
Alignment:
Q  619 taccagaaaactttcagcaactccaaaacttgcaagagttaaggattgttgattgccctaagttggagaagagatgcaagagaggaataggtgaagattg 718  Q
    ||||||| |||||||||||||||||||||||||||  |||| | |||| |  |||||||| |||||||||||||||||||||||||||||||||||||||    
T  16785115 taccagacaactttcagcaactccaaaacttgcaaatgttatgtattgatcgttgccctatgttggagaagagatgcaagagaggaataggtgaagattg 16785016  T
Q  719 gcataagatagctcacattcctc 741  Q
    |||||||||||||||||||||||    
T  16785015 gcataagatagctcacattcctc 16784993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 635 - 769
Target Start/End: Complemental strand, 17095816 - 17095682
Alignment:
Q  635 gcaactccaaaacttgcaagagttaaggattgttgattgccctaagttggagaagagatgcaagagaggaataggtgaagattggcataagatagctcac 734  Q
    ||||||| |||| |||||||||||||| |||  | ||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  17095816 gcaactctaaaaattgcaagagttaagcatttataattgccctatgttggagaagagatgtaagagaggaataggtgaagattggcattagatagctcac 17095717  T
Q  735 attcctcaagttgaattggaatctgatgaaaaacc 769  Q
    |||||| || ||||||||||| |||||| ||||||    
T  17095716 attcctgaatttgaattggaaactgatgcaaaacc 17095682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 17068007 - 17067868
Alignment:
Q  6 aggagcagagatgctaccacaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaa 105  Q
    ||||| |||||||||| ||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||||||||||  | ||||||| || | ||    
T  17068007 aggagtagagatgctaacacaacttttaaagttaaatataagaaatgtccccaaacttacattgccacccattccatctgtcgagtcactttttgttcaa 17067908  T
Q  106 ggaggaaatgaagagttattgaagtccattgttaacaaca 145  Q
    |||||||||||||||||| ||||||||||| || ||||||    
T  17067907 ggaggaaatgaagagttaatgaagtccattatttacaaca 17067868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 303 - 514
Target Start/End: Complemental strand, 16795304 - 16795093
Alignment:
Q  303 tcttaagacactttatatccatgattgtccacagtttgtttttccacataacatgaccaatctaacttccctttgtgaactgattgtctccgggggtgat 402  Q
    ||||||||||||| |||||    | ||||||||||||||||||||||||||||||| | |||||||||| || || |  |||  ||||| ||||||||||    
T  16795304 tcttaagacacttaatatcatcaactgtccacagtttgtttttccacataacatgaacgatctaacttctctatgggttctgcatgtctacgggggtgat 16795205  T
Q  403 gaaaaagtactagaaagcttagaagacatcccctcactgcaatctttgtatctgaatcatttcctttctctaagatcctttccagactgtttgggtgtaa 502  Q
    |||||| || ||||| ||||||||| |||||||||||| |||  ||||| ||||| | |||||| |||||||| |||||| || ||  |||||||||  |    
T  16795204 gaaaaaatattagaaggcttagaaggcatcccctcactacaaattttgtctctgactaatttcccttctctaacatccttgccggatagtttgggtgcca 16795105  T
Q  503 tgacttctcttc 514  Q
    | ||||||||||    
T  16795104 tcacttctcttc 16795093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 608 - 740
Target Start/End: Complemental strand, 17067335 - 17067203
Alignment:
Q  608 gttaaggtctctaccagaaaactttcagcaactccaaaacttgcaagagttaaggattgttgattgccctaagttggagaagagatgcaagagaggaata 707  Q
    |||||| || || ||||| ||||||||||||||||  |||||||||  | || |  ||| ||||||||||||||||||||||||||  |||| ||||| |    
T  17067335 gttaagttcactgccagacaactttcagcaactccggaacttgcaaatgatacgttttgatgattgccctaagttggagaagagattgaagataggaaaa 17067236  T
Q  708 ggtgaagattggcataagatagctcacattcct 740  Q
    ||||||||||||||||| |||||||||||||||    
T  17067235 ggtgaagattggcataaaatagctcacattcct 17067203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 331 - 562
Target Start/End: Complemental strand, 16656128 - 16655897
Alignment:
Q  331 ccacagtttgtttttccacataacatgaccaatctaacttccctttgtgaactgattgtctccgggggtgatgaaaaagtactagaaagcttagaagaca 430  Q
    |||||||| ||||||||||||||||||| || ||||||||||||  ||  |||| |  |||| |   || |||||||  |||||||  || |||||| ||    
T  16656128 ccacagttagtttttccacataacatgaacagtctaacttccctccgtcgactggtactctcggattgtaatgaaaacatactagatggcatagaaggca 16656029  T
Q  431 tcccctcactgcaatctttgtatctgaatcatttcctttctctaagatcctttccagactgtttgggtgtaatgacttctcttcaaaatttacaaattta 530  Q
    ||||||||||||||  ||||| |||| || |||| | ||| |||| |||||| ||||||||||||||||  || ||||||||||| |  ||||| ||| |    
T  16656028 tcccctcactgcaaagtttgtctctgtattattttccttcactaacatccttgccagactgtttgggtgccatcacttctcttcagacattacacattca 16655929  T
Q  531 caggtttccaaagttaagttcactactagaca 562  Q
      | |||||||||||||||||||||| |||||    
T  16655928 gggatttccaaagttaagttcactaccagaca 16655897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 428 - 562
Target Start/End: Complemental strand, 16785241 - 16785107
Alignment:
Q  428 acatcccctcactgcaatctttgtatctgaatcatttcctttctctaagatcctttccagactgtttgggtgtaatgacttctcttcaaaatttacaaat 527  Q
    |||||||||||||||||| |||| |||||| | |||| | |||||||| |||||| ||||||||||||||||  ||||||||| | ||| | ||||||||    
T  16785241 acatcccctcactgcaatatttgcatctgattgattttccttctctaacatccttgccagactgtttgggtgccatgacttctgtacaagaattacaaat 16785142  T
Q  528 ttacaggtttccaaagttaagttcactactagaca 562  Q
    |||  ||||| |||||||||||||| ||| |||||    
T  16785141 ttatgggttttcaaagttaagttcagtaccagaca 16785107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 609 - 740
Target Start/End: Original strand, 16558391 - 16558520
Alignment:
Q  609 ttaaggtctctaccagaaaactttcagcaactccaaaacttgcaagagttaaggattgttgattgccctaagttggagaagagatgcaagagaggaatag 708  Q
    ||||| || |||||||| ||||||||||| |||| ||||||||||   ||    ||||  |||||||||| |||||||||||||||||||||  ||||||    
T  16558391 ttaagttcactaccagacaactttcagcacctccgaaacttgcaaagattgtatattgaagattgccctatgttggagaagagatgcaagag--gaatag 16558488  T
Q  709 gtgaagattggcataagatagctcacattcct 740  Q
    |||| |||||||||||||||||||||||||||    
T  16558489 gtgacgattggcataagatagctcacattcct 16558520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 16985961 - 16985822
Alignment:
Q  6 aggagcagagatgctaccacaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaa 105  Q
    ||||| |||||||||| |||||||||||||||| ||||||| ||| | | | ||| ||||||| ||| |||||||||||||| | |||||||| | | ||    
T  16985961 aggagtagagatgctaacacaacttttagagttagatataacaaaagcctctaaatttacatttccatcccttccatctgttgagtcactttcggttcaa 16985862  T
Q  106 ggaggaaatgaagagttattgaagtccattgttaacaaca 145  Q
    |||||||||||||| ||||| |||| ||||| | ||||||    
T  16985861 ggaggaaatgaagacttatttaagttcattggttacaaca 16985822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 16786469 - 16786330
Alignment:
Q  6 aggagcagagatgctaccacaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaa 105  Q
    ||||| ||||||||| ||||||| |||  ||||  |||||| |||||||||||| |||||| || |  ||||||||| |||| | |||||| ||||||      
T  16786469 aggagtagagatgctgccacaacctttgaagttaaatataataaatgtccccaagcttacactgtcgtcccttccatatgttgagtcacttactgctagt 16786370  T
Q  106 ggaggaaatgaagagttattgaagtccattgttaacaaca 145  Q
    ||| |||||||||||||||||||||||||| || ||||||    
T  16786369 ggaagaaatgaagagttattgaagtccattttttacaaca 16786330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 608 - 769
Target Start/End: Complemental strand, 16985298 - 16985140
Alignment:
Q  608 gttaaggtctctaccagaaaactttcagcaactccaaaacttgcaagagttaaggattgttgattgccctaagttggagaagagatgcaagagaggaata 707  Q
    |||||| || |||||||| | |||||||||||||| ||| |||||| ||||||  ||| |||||||||||| |||||||||||||| |||||||||        
T  16985298 gttaagttcactaccagacagctttcagcaactccgaaatttgcaaaagttaattattattgattgccctatgttggagaagagatacaagagagg---t 16985202  T
Q  708 ggtgaagattggcataagatagctcacattcctcaagttgaattggaatctgatgaaaaacc 769  Q
     |||||||   |||||||||||||||||||||| || || | || ||||||| || ||||||    
T  16985201 tgtgaagaccagcataagatagctcacattcctgaattttattttgaatctggtgcaaaacc 16985140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 132
Target Start/End: Complemental strand, 16779678 - 16779552
Alignment:
Q  6 aggagcagagatgctaccacaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaa 105  Q
    ||||| |||||||||||| ||||||||  ||||  |||||| | ||||||| |||||| ||||||   |||||||||||||  | |||||||||| ||      
T  16779678 aggagtagagatgctaccccaacttttgaagttacatataacagatgtccctaaacttgcattgcagtcccttccatctgtggagtcactttctgttagt 16779579  T
Q  106 ggaggaaatgaagagttattgaagtcc 132  Q
    |||||||||||||| ||||||||||||    
T  16779578 ggaggaaatgaagaattattgaagtcc 16779552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 303 - 516
Target Start/End: Complemental strand, 16779270 - 16779057
Alignment:
Q  303 tcttaagacactttatatccatgattgtccacagtttgtttttccacataacatgaccaatctaacttccctttgtgaactgattgtctccgggggtgat 402  Q
    |||| |||||||| |||||| | | |||| |||||| ||||||||||||||||||| || ||||||||||||| |   |||| |  |||      || ||    
T  16779270 tcttgagacacttcatatccgttactgtctacagttagtttttccacataacatgaacagtctaacttcccttcgccgactgctactctggaattgtaat 16779171  T
Q  403 gaaaaagtactagaaagcttagaagacatcccctcactgcaatctttgtatctgaatcatttcctttctctaagatcctttccagactgtttgggtgtaa 502  Q
    || ||  |||||||  || |||||| ||||||||||||||||   |||| |||| ||||||| | ||| |||| ||| || ||||||||||||||||  |    
T  16779170 gagaacatactagatggcatagaaggcatcccctcactgcaaaaattgtctctgtatcattttccttcactaacatcattgccagactgtttgggtgcca 16779071  T
Q  503 tgacttctcttcaa 516  Q
    ||||||||||||||    
T  16779070 tgacttctcttcaa 16779057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 663 - 740
Target Start/End: Original strand, 18808544 - 18808621
Alignment:
Q  663 attgttgattgccctaagttggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct 740  Q
    |||||||| || ||||||||||||||  ||||||||| |||||  || ||||||||||| |||||||||||| |||||    
T  18808544 attgttgaatgtcctaagttggagaaacgatgcaagaaaggaactggggaagattggcaaaagatagctcacgttcct 18808621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 306
Target Start/End: Complemental strand, 16785538 - 16785438
Alignment:
Q  206 ttgaacttggcactcttagtgctttagaatctcttacaattgacagctgtaatgaaatcgagtcattatcagagcagttgttgcaaagtttgagttctct 305  Q
    ||||||| || |||||| ||||||||||||||||||  |||||    ||| ||||||| ||||| || || ||||| ||||||||| |||||||||||||    
T  16785538 ttgaactcggtactcttggtgctttagaatctcttaacattgattcttgtcatgaaatggagtccttttcggagcaattgttgcaaggtttgagttctct 16785439  T
Q  306 t 306  Q
    |    
T  16785438 t 16785438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 328 - 375
Target Start/End: Complemental strand, 16985519 - 16985472
Alignment:
Q  328 tgtccacagtttgtttttccacataacatgaccaatctaacttccctt 375  Q
    |||||||| |||||||||||||||||||||| || |||||||||||||    
T  16985519 tgtccacaatttgtttttccacataacatgaacagtctaacttccctt 16985472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 691 - 740
Target Start/End: Complemental strand, 16841599 - 16841550
Alignment:
Q  691 gatgcaagagaggaataggtgaagattggcataagatagctcacattcct 740  Q
    ||||||||| || || ||| ||||||||||||||||||||||||||||||    
T  16841599 gatgcaagaaagaaacaggggaagattggcataagatagctcacattcct 16841550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 17067562 - 17067506
Alignment:
Q  328 tgtccacagtttgtttttccacataacatgaccaatctaacttccctttgtgaactg 384  Q
    |||||||| || ||||||||||||||||||| || ||||||||||||| || |||||    
T  17067562 tgtccacaattcgtttttccacataacatgaacagtctaacttcccttcgtcaactg 17067506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 374
Target Start/End: Complemental strand, 17096984 - 17096945
Alignment:
Q  335 agtttgtttttccacataacatgaccaatctaacttccct 374  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  17096984 agtttgtttttccacataacatgaacagtctaacttccct 17096945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 691 - 740
Target Start/End: Complemental strand, 16836488 - 16836439
Alignment:
Q  691 gatgcaagagaggaataggtgaagattggcataagatagctcacattcct 740  Q
    ||||||||| || || ||| ||||||||||| ||||||||||||||||||    
T  16836488 gatgcaagaaagaaacaggggaagattggcacaagatagctcacattcct 16836439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 554
Target Start/End: Complemental strand, 17067401 - 17067324
Alignment:
Q  477 atcctttccagactgtttgggtgtaatgacttctcttcaaaatttacaaatttacaggtttccaaagttaagttcact 554  Q
    |||||| |||||||| |||||||  |||||||||||||| |  ||| ||||||  |  ||||||||||||||||||||    
T  17067401 atccttgccagactggttgggtgccatgacttctcttcagacattagaaatttttaactttccaaagttaagttcact 17067324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 101; Significance: 1e-49; HSPs: 10)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 608 - 752
Target Start/End: Complemental strand, 10702 - 10558
Alignment:
Q  608 gttaaggtctctaccagaaaactttcagcaactccaaaacttgcaagagttaaggattgttgattgccctaagttggagaagagatgcaagagaggaata 707  Q
    |||||| || || ||||| ||||||||||||||||||||||||||| ||||||| |||  || ||||||||||||||||||||||||||||||||| |||    
T  10702 gttaagttcactgccagacaactttcagcaactccaaaacttgcaaaagttaagaatttgtggttgccctaagttggagaagagatgcaagagaggtata 10603  T
Q  708 ggtgaagattggcataagatagctcacattcctcaagttgaattg 752  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  10602 ggtgaagattggcataagatagctcacattcctgaagttgaattg 10558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 608 - 740
Target Start/End: Complemental strand, 6354 - 6222
Alignment:
Q  608 gttaaggtctctaccagaaaactttcagcaactccaaaacttgcaagagttaaggattgttgattgccctaagttggagaagagatgcaagagaggaata 707  Q
    |||||| || |||||||| |||||||||||||||||||||||||||  |||||  |||   | ||| ||||  |||||||||||||||||||||||||||    
T  6354 gttaagttcactaccagacaactttcagcaactccaaaacttgcaaacgttaactatttcaggttgtcctatattggagaagagatgcaagagaggaata 6255  T
Q  708 ggtgaagattggcataagatagctcacattcct 740  Q
    |||||||||||||||||||||||||||||||||    
T  6254 ggtgaagattggcataagatagctcacattcct 6222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 6980 - 6856
Alignment:
Q  7 ggagcagagatgctaccacaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaag 106  Q
    |||| |||||||||||||||||||||| | || ||||||| |||||||||||||||||||||| || |||||| ||||||| | |||||||||||||  |    
T  6980 ggagtagagatgctaccacaacttttaaatttagatataacaaatgtccccaaacttacattgacatcccttctatctgttgagtcactttctgctagtg 6881  T
Q  107 gaggaaatgaagagttattgaagtc 131  Q
    ||||||||||||| |||||||||||    
T  6880 gaggaaatgaagaattattgaagtc 6856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 303 - 375
Target Start/End: Complemental strand, 16165 - 16093
Alignment:
Q  303 tcttaagacactttatatccatgattgtccacagtttgtttttccacataacatgaccaatctaacttccctt 375  Q
    |||| |||||||| |||||  | | ||||||||||||||||||||||||||||||| || |||||||||||||    
T  16165 tcttgagacacttcatatcagttactgtccacagtttgtttttccacataacatgaacagtctaacttccctt 16093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 303 - 374
Target Start/End: Complemental strand, 6594 - 6523
Alignment:
Q  303 tcttaagacactttatatccatgattgtccacagtttgtttttccacataacatgaccaatctaacttccct 374  Q
    |||| |||||||| ||||| || ||||||||||||| ||||||||||||||||||| || |||| |||||||    
T  6594 tcttgagacacttcatatctattattgtccacagttagtttttccacataacatgaacagtctagcttccct 6523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 11356 - 11217
Alignment:
Q  6 aggagcagagatgctaccacaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaa 105  Q
    ||||| ||||||||||| ||| |||||  |||| | ||||| | ||||||| |||||| ||||||   ||||||||||| |  | ||||||| |||||      
T  11356 aggagtagagatgctacaacagcttttgaagttagctataacagatgtccctaaacttgcattgcagtcccttccatctatggagtcactttatgctagt 11257  T
Q  106 ggaggaaatgaagagttattgaagtccattgttaacaaca 145  Q
     ||||||||||||| ||||||||||||||| || ||||||    
T  11256 cgaggaaatgaagaattattgaagtccattttttacaaca 11217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 701 - 752
Target Start/End: Complemental strand, 15906 - 15855
Alignment:
Q  701 aggaataggtgaagattggcataagatagctcacattcctcaagttgaattg 752  Q
    ||||| ||||||||||||||||||||||||||||||||||||| || |||||    
T  15906 aggaaaaggtgaagattggcataagatagctcacattcctcaatttcaattg 15855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 338 - 516
Target Start/End: Complemental strand, 10919 - 10741
Alignment:
Q  338 ttgtttttccacataacatgaccaatctaacttccctttgtgaactgattgtctccgggggtgatgaaaaagtactagaaagcttagaagacatcccctc 437  Q
    ||||||||||||||||||||| || ||||||||||||  ||||||||    |||| |   || |||||||  |||||||  || |||||| |||||||||    
T  10919 ttgtttttccacataacatgaacagtctaacttccctccgtgaactgcgactctcggattgtaatgaaaacatactagatggcatagaaggcatcccctc 10820  T
Q  438 actgcaatctttgtatctgaatcatttcctttctctaagatcctttccagactgtttgggtgtaatgacttctcttcaa 516  Q
    |||| ||   |||| ||||  | |||| | ||| | || |||||| ||||||||||||||||  |||||||||||||||    
T  10819 actgaaaagattgtgtctgtttgattttcattcacgaacatccttgccagactgtttgggtgccatgacttctcttcaa 10741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 217 - 306
Target Start/End: Complemental strand, 11112 - 11023
Alignment:
Q  217 actcttagtgctttagaatctcttacaattgacagctgtaatgaaatcgagtcattatcagagcagttgttgcaaagtttgagttctctt 306  Q
    ||||||||||| ||||||| ||||| ||||||    ||| ||||| | |||||||| |||||||| ||||||||| ||||||||||||||    
T  11112 actcttagtgcattagaatttcttagaattgatttatgtgatgaattggagtcattttcagagcacttgttgcaaggtttgagttctctt 11023  T

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Target: scaffold0133; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 218 - 306
Target Start/End: Complemental strand, 6751 - 6663
Alignment:
Q  218 ctcttagtgctttagaatctcttacaattgacagctgtaatgaaatcgagtcattatcagagcagttgttgcaaagtttgagttctctt 306  Q
    |||||| |||||||||||||||| | |||||  | || |||||||| |||||||| || ||||| |||||| || ||||||||||||||    
T  6751 ctcttactgctttagaatctctttctattgaacgttgcaatgaaatggagtcattttcggagcacttgttgaaaggtttgagttctctt 6663  T

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Target: scaffold0256 (Bit Score: 95; Significance: 5e-46; HSPs: 3)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 618 - 748
Target Start/End: Complemental strand, 7003 - 6873
Alignment:
Q  618 ctaccagaaaactttcagcaactccaaaacttgcaagagttaaggattgttgattgccctaagttggagaagagatgcaagagaggaataggtgaagatt 717  Q
    |||||||| |||||||||||||||||||||||||||   |||||||||  || |||||||| ||||||||||||||||||||||||||||||||||||||    
T  7003 ctaccagacaactttcagcaactccaaaacttgcaaagcttaaggatttgtggttgccctatgttggagaagagatgcaagagaggaataggtgaagatt 6904  T
Q  718 ggcataagatagctcacattcctcaagttga 748  Q
    |||||||||||||||||||||||||| ||||    
T  6903 ggcataagatagctcacattcctcaaattga 6873  T

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Target: scaffold0256; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 7661 - 7522
Alignment:
Q  6 aggagcagagatgctaccacaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaa 105  Q
    ||||| |||||||||||||||||||||  |||| ||||||| | ||||||| |||||| ||||||   |||||||||||||  | |||||||||| ||      
T  7661 aggagtagagatgctaccacaacttttgaagttagatataacagatgtccctaaacttgcattgcagtcccttccatctgtggagtcactttctgttagt 7562  T
Q  106 ggaggaaatgaagagttattgaagtccattgttaacaaca 145  Q
    |||||||||||||| |||||||||||| || || ||||||    
T  7561 ggaggaaatgaagaattattgaagtcctttttttacaaca 7522  T

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Target: scaffold0256; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 7371 - 7322
Alignment:
Q  257 atgaaatcgagtcattatcagagcagttgttgcaaagtttgagttctctt 306  Q
    ||||||| ||||||||||||||||| ||||||||| ||||||| ||||||    
T  7371 atgaaatggagtcattatcagagcacttgttgcaaggtttgaggtctctt 7322  T

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Target: chr8 (Bit Score: 88; Significance: 7e-42; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 603 - 758
Target Start/End: Complemental strand, 13375941 - 13375786
Alignment:
Q  603 ccgatgttaaggtctctaccagaaaactttcagcaactccaaaacttgcaagagttaaggattgttgattgccctaagttggagaagagatgcaagagag 702  Q
    |||| ||||||||| |||||||| | |||||||||||||| ||||||||||  |||||| ||||||  |||| ||| |||||||||| ||||||||||||    
T  13375941 ccgaagttaaggtcactaccagacagctttcagcaactccgaaacttgcaaaggttaagtattgttagttgctctatgttggagaagcgatgcaagagag 13375842  T
Q  703 gaataggtgaagattggcataagatagctcacattcctcaagttgaattggaatct 758  Q
    ||||||| ||||||||| |||||||||||||||| ||| |||||||||||||||||    
T  13375841 gaataggagaagattgggataagatagctcacatacctgaagttgaattggaatct 13375786  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 13376548 - 13376454
Alignment:
Q  51 tgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaaggaggaaatgaagagttattgaagtccattgttaacaaca 145  Q
    |||||| |||||| ||||| |  |||||||||||||| | |  |||| || ||  |||||||||||||||||||||||||||||| |||||||||    
T  13376548 tgtcccaaaacttgcattgtcgtcccttccatctgttgagttcctttttgttaccggaggaaatgaagagttattgaagtccatttttaacaaca 13376454  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 13376294 - 13376245
Alignment:
Q  257 atgaaatcgagtcattatcagagcagttgttgcaaagtttgagttctctt 306  Q
    ||||||| |||||||| |||||||| ||||||||| ||||||||||||||    
T  13376294 atgaaattgagtcattttcagagcacttgttgcaaggtttgagttctctt 13376245  T

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Target: chr3 (Bit Score: 85; Significance: 4e-40; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 608 - 752
Target Start/End: Original strand, 38941658 - 38941802
Alignment:
Q  608 gttaaggtctctaccagaaaactttcagcaactccaaaacttgcaagagttaaggattgttgattgccctaagttggagaagagatgcaagagaggaata 707  Q
    |||||| || |||||||| |||||||||||||||||||||||||||   ||    ||||||| |||||||| |||||||||||||||||||||||||| |    
T  38941658 gttaagttcactaccagacaactttcagcaactccaaaacttgcaaagattgtatattgttgcttgccctatgttggagaagagatgcaagagaggaaaa 38941757  T
Q  708 ggtgaagattggcataagatagctcacattcctcaagttgaattg 752  Q
    ||||||||||||||||||||||||||||||||| || ||||||||    
T  38941758 ggtgaagattggcataagatagctcacattcctgaatttgaattg 38941802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 38941013 - 38941138
Alignment:
Q  6 aggagcagagatgctaccacaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaa 105  Q
    ||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||   |||||||||||||| | ||  ||| |||||      
T  38941013 aggagtagagatgctaccacaacttttaaagttagatataagaaatgtccccaaacttgcattgcagtcccttccatctgttgagtcgttttttgctagt 38941112  T
Q  106 ggaggaaatgaagagttattgaagtc 131  Q
    |||||||||||||| |||||||||||    
T  38941113 ggaggaaatgaagaattattgaagtc 38941138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 303 - 562
Target Start/End: Original strand, 38941421 - 38941677
Alignment:
Q  303 tcttaagacactttatatccatgattgtccacagtttgtttttccacataacatgaccaatctaacttccctttgtgaactgattgtctccgggggtgat 402  Q
    |||| ||||||||  |||| || ||||||||||||| ||||||||||||||||||| || ||| ||||||||  ||  |||| | ||||   ||||| ||    
T  38941421 tcttgagacacttcgtatcaattattgtccacagttcgtttttccacataacatgaacagtctgacttccctccgtcgactggtagtct---ggggtaat 38941517  T
Q  403 gaaaaagtactagaaagcttagaagacatcccctcactgcaatctttgtatctgaatcatttcctttctctaagatcctttccagactgtttgggtgtaa 502  Q
    |||||  ||||||| |||||||||| ||||||||||||||||  ||||| ||||    |||| | |||  ||| |||||| |||||||| |||||||  |    
T  38941518 gaaaacatactagacagcttagaaggcatcccctcactgcaaaatttgtgtctgttcgattttccttcaataacatccttgccagactggttgggtgcca 38941617  T
Q  503 tgacttctcttcaaaatttacaaatttacaggtttccaaagttaagttcactactagaca 562  Q
    ||||||||||||||   ||||| ||    | ||||||||||||||||||||||| |||||    
T  38941618 tgacttctcttcaagtattacacatccttaagtttccaaagttaagttcactaccagaca 38941677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 603 - 739
Target Start/End: Original strand, 7055578 - 7055717
Alignment:
Q  603 ccgatgttaaggtctctaccagaaaactttcagcaactccaaaacttgcaagagttaaggattgttgattgccctaagttg--gagaa-gagatgcaaga 699  Q
    |||||||||||||| |||||||| | | ||||||||||||||||||| ||| ||||||| ||| ||  | || ||| ||||  ||||| | |||||||||    
T  7055578 ccgatgttaaggtcgctaccagacagcattcagcaactccaaaacttacaaaagttaagtattcttcgtagctctatgttgttgagaaagcgatgcaaga 7055677  T
Q  700 gaggaataggtgaagattggcataagatagctcacattcc 739  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  7055678 gaggagtaggtgaagattggcataagatagctcacattcc 7055717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 7054927 - 7055065
Alignment:
Q  7 ggagcagagatgctaccacaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaag 106  Q
    |||| ||||||| |||  ||||||||||| || ||| ||| | ||||||| ||||| ||||||||  ||||||||||| || | ||||||||||||   |    
T  7054927 ggagtagagatgttacaccaacttttagacttagatctaacagatgtccctaaactcacattgccgtcccttccatctattgagtcactttctgctcgtg 7055026  T
Q  107 gaggaaatgaagagttattgaagtccattgttaacaaca 145  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  7055027 gaggaaatgaagagttattgaagtccattttttacaaca 7055065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 303 - 384
Target Start/End: Complemental strand, 38943254 - 38943173
Alignment:
Q  303 tcttaagacactttatatccatgattgtccacagtttgtttttccacataacatgaccaatctaacttccctttgtgaactg 384  Q
    |||| |||||||| | |||||| ||||||||| ||| ||||||||||||||||||| || |||||||||||||||| |||||    
T  38943254 tcttgagacacttaaaatccatcattgtccactgttcgtttttccacataacatgagcagtctaacttccctttgtcaactg 38943173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 329 - 565
Target Start/End: Original strand, 7055369 - 7055605
Alignment:
Q  329 gtccacagtttgtttttccacataacatgaccaatctaacttccctttgtgaactgattgtctccgggggtgatgaaaaagtactagaaagcttagaaga 428  Q
    |||||||||| |||||||| |||||||||| || ||||||||||||| || || || | || |  ||| || |||||||  ||||||| | | ||||||     
T  7055369 gtccacagttcgtttttccgcataacatgaacagtctaacttcccttcgtcaattggtagtttgggggtgtaatgaaaacatactagacaacatagaagg 7055468  T
Q  429 catcccctcactgcaatctttgtatctgaatcatttcctttctctaagatcctttccagactgtttgggtgtaatgacttctcttcaaaatttacaaatt 528  Q
     |||||||||||| ||   |||| |||| |  |||| | ||| |||| |||||| || ||||| |||||||  |||||||||||||||   ||||||||     
T  7055469 tatcccctcactgaaaaggttgtctctggacaattttccttccctaacatccttgccggactggttgggtgccatgacttctcttcaagtattacaaatc 7055568  T
Q  529 tacaggtttccaaagttaagttcactactagacagca 565  Q
    |  |||||||| | |||||| || |||| ||||||||    
T  7055569 tctaggtttccgatgttaaggtcgctaccagacagca 7055605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 694 - 749
Target Start/End: Complemental strand, 20151629 - 20151574
Alignment:
Q  694 gcaagagaggaataggtgaagattggcataagatagctcacattcctcaagttgaa 749  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| || |||||    
T  20151629 gcaagagaggaataggtgaagattggcataagatagctaacattcctgaaattgaa 20151574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 472 - 549
Target Start/End: Complemental strand, 20152984 - 20152907
Alignment:
Q  472 ctaagatcctttccagactgtttgggtgtaatgacttctcttcaaaatttacaaatttacaggtttccaaagttaagt 549  Q
    |||| |||||| ||| ||| ||||||||  ||||||||||||||||| ||| ||||   || ||||||||||||||||    
T  20152984 ctaacatccttgccaaactatttgggtgccatgacttctcttcaaaaattagaaatcatcaagtttccaaagttaagt 20152907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 676 - 740
Target Start/End: Original strand, 3535 - 3599
Alignment:
Q  676 ctaagttggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct 740  Q
    |||||||||||||  ||||||||| |||||  || ||||||||||| |||||||||||| |||||    
T  3535 ctaagttggagaaacgatgcaagaaaggaactggggaagattggcaaaagatagctcacgttcct 3599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 675 - 740
Target Start/End: Complemental strand, 7154 - 7089
Alignment:
Q  675 cctaagttggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct 740  Q
    ||||||||||||||  ||| ||||| |||||  || ||||||||||| |||||||||||| |||||    
T  7154 cctaagttggagaaacgatccaagaaaggaactggggaagattggcaaaagatagctcacgttcct 7089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 675 - 740
Target Start/End: Complemental strand, 2466 - 2401
Alignment:
Q  675 cctaagttggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct 740  Q
    ||||||| ||||||  ||||||||| |||||  || ||||||||||| |||||||||||| |||||    
T  2466 cctaagtgggagaaacgatgcaagaaaggaactggggaagattggcaaaagatagctcacgttcct 2401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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