View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11356_low_20 (Length: 424)
Name: NF11356_low_20
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 4 - 406
Target Start/End: Original strand, 5687618 - 5688012
Alignment:
| Q |
4 |
agcaacactaactctccttccctcattttcaccatgaaccaaccaccaccaactaaatcatcactgttcactcctccaccgcctcccaaaccaaccaccg |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |
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| T |
5687618 |
agcaacactaactctccttccctcattttcaccatgaaacaaccaccaccaactaaatcatcaccgttcactcctccactgcctcccacaccaaccaccg |
5687717 |
T |
|
| Q |
104 |
tccatccatccatgtcgtaagcccactgattcttgataatctcgcttcgattcttcatttggaatctaaatctgaatctcacgtttatatgaatgaattt |
203 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5687718 |
tcca----tccatgtcgtaagcccactgattcttgataatctcgcttcgattctttatttggaatctaaatctgaatctcacgtttatatgaatgaatcc |
5687813 |
T |
|
| Q |
204 |
gaatctgaacactatctataagagtgtcaaagagaaaagggacaaagattgagaagaagnnnnnnncattaaaagggtaacnnnnnnnnncttctggaaa |
303 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| || ||||||||||||||| |||||| || |
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| T |
5687814 |
gaatctgaacactatctataaaagtgtcaaagagaaaagggtcaaagattgagaataa-aaaaaaacattaaaagggtaacttttttt---ttctgggaa |
5687909 |
T |
|
| Q |
304 |
tggtgataacacaacctgtaagagggaagaacagtggtgaacgatgaggatgattttgtagtgaagagtgatgaaatgaaaatggagcagtggaaccaga |
403 |
Q |
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||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5687910 |
tggtgataacacaacctataagagggaagaacagtggtggacgatgaggttgattttatagtgaagagtgatgaaatgaaaatggagcagtggaaccaga |
5688009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 4 - 212
Target Start/End: Complemental strand, 22622752 - 22622546
Alignment:
| Q |
4 |
agcaacactaactctccttccctcattttcaccatgaaccaaccaccaccaactaaatcatcactgttcactcctccaccgcctcccaaaccaaccaccg |
103 |
Q |
| |
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||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| || ||| ||||||||||||| ||||| ||||| |
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| T |
22622752 |
agcaacactcgctctccttctctcattttcaccatgaaacaaccaccaccaactaaatcatcaccgtccac----ccaccgcctcccacaccaaacaccg |
22622657 |
T |
|
| Q |
104 |
tccatccatccatgtcgtaagcccactgattcttgataatctcgcttcgattcttcatttggaatctaaatctgaatctca---cgtttatatgaatgaa |
200 |
Q |
| |
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| |||||||||||||||||||||| ||||||||||||||||||||||||||||| | || ||||||||||||||| | ||||||||||||||| |
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| T |
22622656 |
t-gatccatccatgtcgtaagcccatcgattcttgataatctcgcttcgattcttctgtaagagtctaaatctgaatctgatagtgtttatatgaatgaa |
22622558 |
T |
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| Q |
201 |
tttgaatctgaa |
212 |
Q |
| |
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| ||||| |||| |
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| T |
22622557 |
tctgaatttgaa |
22622546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 46674606 - 46674216
Alignment:
| Q |
1 |
catagcaacactaactctccttccctcattttcaccatgaaccaaccaccaccaactaaatcatcactgttcactcctccaccgcctcccaaaccaacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||| | |||||||||||| |||||||| |
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| T |
46674606 |
catagcaacactaactctccttccctcattttcatcatgaaacaaccaccaccaactaaatcatcaccgttcactctttcaccgcctcccacaccaacca |
46674507 |
T |
|
| Q |
101 |
ccgtccatccatccatgtcgtaagcccactgattcttgataatctcgcttcgattcttcatttggaatctaaatctgaatctcacgtttatatgaatgaa |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
46674506 |
ccgtccatccat----gtcgtaagcccactgattcttgataatctcgcttcgattctttatttggaatctaaatctgaatctcacgtttatatgaat--- |
46674414 |
T |
|
| Q |
201 |
tttgaatctgaacactatctataagagtgtcaaagagaaaagggacaaagattgagaagaagnnnnnnncattaaaagggtaacnnnnnnnnncttctgg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||| | |
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| T |
46674413 |
---gaatctgaacactatctataagagtgtcaaagagaaaagggtcaaagattgagaagaaaaaaaaaacattaaaagggtaacttttt-----ttctag |
46674322 |
T |
|
| Q |
301 |
aaatggtgataacacaacctgtaagagggaagaacagtggtgaacgatgaggatgattttgtagtgaagagtgatgaaatgaaaatggagcagtggaacc |
400 |
Q |
| |
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||||||||||||||||||| ||||| || |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
46674321 |
gaatggtgataacacaacctataagaaggtagaacagtggtggacgatgaggttgattttgtagtgaagagtgatgaaatgaaaatggaacagtggaacc |
46674222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 4 - 406
Target Start/End: Complemental strand, 31625054 - 31624639
Alignment:
| Q |
4 |
agcaacactaactctccttccctcattttcaccatgaaccaaccaccaccaactaaatcatcactgttcactcctccaccgcctcccaaaccaaccaccg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
31625054 |
agcaacactaactctccttccctcattttcaccatgaaacaaccaccaccaactaaataatcaccgttcactcctccaccgcctcccacaccaaccaccg |
31624955 |
T |
|
| Q |
104 |
tccatccatccatgtcgtaagcccactgattcttgataatctcgcttcgattcttcatttggaatctaaatctgaatctcacg----------------- |
186 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
31624954 |
tccat----ccatgtcgtaagcccactgattcttgataatctcactttgattcttcatttggaatctaattctgaatctcacgtttatatgaatgaatct |
31624859 |
T |
|
| Q |
187 |
----tttatatgaatgaatttgaatctgaacactatctataagagtgtcaaagagaaaagggacaaagattgagaagaagnnnnnnncattaaaagggta |
282 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
31624858 |
cacatttatatgaatgaatctgaatctgaacactatctataagagtgtcaaagagaaaagggtcaaagattgagaagaaaaaaataacattaaaagggta |
31624759 |
T |
|
| Q |
283 |
acnnnnnnnnncttctggaaatggtgataacacaacctgtaagagggaagaacagtggtgaacgatgaggatgattttgtagtgaagagtgatgaaatga |
382 |
Q |
| |
|
|| |||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||| |
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| T |
31624758 |
actttttt----ttctgggaatggtgataacacaacttgtaagagggaagaacagtggtggacaatgaggttgattttgtagtgaagagtgatgaaatga |
31624663 |
T |
|
| Q |
383 |
aaatggagcagtggaaccagaagg |
406 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
31624662 |
aaatggagcagtggaacgagaagg |
31624639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 25 - 258
Target Start/End: Complemental strand, 40250885 - 40250650
Alignment:
| Q |
25 |
ctcattttcaccatgaaccaaccaccaccaactaaatcatcactgttcactcctccaccgcctcccaaaccaaccaccgtccatccatccatgtcgtaag |
124 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||| || |||||||||||| ||||||| |||||||| || |||||||||||||||||| |
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|
| T |
40250885 |
ctcattttcaccatgaaacaaccaccaccaactaaatcgtcaccgtccactcctccaccccctcccacaccaaccattgtg-atccatccatgtcgtaag |
40250787 |
T |
|
| Q |
125 |
cccactgattcttgataatctcgcttcgattcttcatttggaatctaaatctgaatctcacgtttatatgaatgaatttgaatctgaac---actatcta |
221 |
Q |
| |
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|||| |||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| |||||| ||||||||| ||||||||||| | || || |
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|
| T |
40250786 |
cccatagattcttgataatctcacttcgattcttcattcggagtctaaatctgaatctcatgtttatgtgaatgaatctgaatctgaacatgataatata |
40250687 |
T |
|
| Q |
222 |
taagagtgtcaaagagaaaagggacaaagattgagaa |
258 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40250686 |
taagagtgtcaaagagaaaagggtcaaagattgagaa |
40250650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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