View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11356_low_24 (Length: 361)

Name: NF11356_low_24
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11356_low_24
NF11356_low_24
[»] chr8 (5 HSPs)
chr8 (17-348)||(8955672-8956002)
chr8 (277-348)||(39359752-39359823)
chr8 (294-348)||(10344357-10344411)
chr8 (311-348)||(41293705-41293742)
chr8 (311-347)||(36015607-36015643)
[»] chr6 (1 HSPs)
chr6 (296-348)||(3660337-3660389)
[»] chr2 (1 HSPs)
chr2 (296-346)||(42141580-42141630)
[»] chr7 (1 HSPs)
chr7 (311-350)||(2323343-2323382)
[»] chr5 (3 HSPs)
chr5 (296-347)||(3263493-3263544)
chr5 (296-350)||(22920474-22920528)
chr5 (296-348)||(38010907-38010959)
[»] chr3 (1 HSPs)
chr3 (311-348)||(50879645-50879682)
[»] chr4 (1 HSPs)
chr4 (296-348)||(7037468-7037520)


Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 348
Target Start/End: Complemental strand, 8956002 - 8955672
Alignment:
Q  17 acaaaactcgtgtatatcaaagagcttctacttagaattatgaaatctttaaatgaatcttattaactagaataaataatctctaactttttgggcatgt 116  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8956002 acaaaacttgtgtatatcaaagagcttctacttagaattatgaaatctttaaatgaatcttattaactagaataaataatctctaactttttgggcatgt 8955903  T
Q  117 tttggtggtcaaggtatggtggagagaacttctcactaatcctactacaagcattgattaataggcacataatgagactcattgctattcatcagactca 216  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  8955902 tttggtggtcaaggtatgatggagagaacttctcactaatcctactacaagcattgattaattggcacataatgagactcattgctattcatcagactaa 8955803  T
Q  217 catgagaggagaatgaaaaactatgtacacaacaattaaaacaagaaaaataatatctaaacaaccattttaggatgatttttggacaatttcttctctc 316  Q
    ||||||||||||||| ||||||||||||| |||||||| | ||||| ||||||||| ||||||| ||||||  ||| |||||| ||||||||||||| ||    
T  8955802 catgagaggagaatg-aaaactatgtacataacaattagatcaagagaaataatatttaaacaatcattttgtgataatttttagacaatttcttctttc 8955704  T
Q  317 atactcacatgatgcacttatcttctctcttc 348  Q
    ||||| | |||||| |||||| ||||||||||    
T  8955703 atacttatatgatgtacttattttctctcttc 8955672  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 348
Target Start/End: Original strand, 39359752 - 39359823
Alignment:
Q  277 acaaccattttaggatgatttttggacaatttcttctctcatactcacatgatgcacttatcttctctcttc 348  Q
    |||||||||||  ||  |||||||||||||||  ||||||||||||||||||   ||||||| |||||||||    
T  39359752 acaaccattttctgacaatttttggacaattttctctctcatactcacatgacatacttatcctctctcttc 39359823  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 348
Target Start/End: Original strand, 10344357 - 10344411
Alignment:
Q  294 atttttggacaatttcttctctcatactcacatgatgcacttatcttctctcttc 348  Q
    |||||||||||| ||  ||||||||||||||||||||| ||| || |||||||||    
T  10344357 atttttggacaactttctctctcatactcacatgatgctcttttcctctctcttc 10344411  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 41293742 - 41293705
Alignment:
Q  311 tctctcatactcacatgatgcacttatcttctctcttc 348  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  41293742 tctctcatactcacatgatggtcttatcttctctcttc 41293705  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 36015607 - 36015643
Alignment:
Q  311 tctctcatactcacatgatgcacttatcttctctctt 347  Q
    |||||||||||||||||||| | ||||||||||||||    
T  36015607 tctctcatactcacatgatgtatttatcttctctctt 36015643  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 3660389 - 3660337
Alignment:
Q  296 ttttggacaatttcttctctcatactcacatgatgcacttatcttctctcttc 348  Q
    ||||| ||||||| |||||||||||||||||||||  ||||||||||||||||    
T  3660389 ttttgtacaattttttctctcatactcacatgatggtcttatcttctctcttc 3660337  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 42141630 - 42141580
Alignment:
Q  296 ttttggacaatttcttctctcatactcacatgatgcacttatcttctctct 346  Q
    |||||||||| ||  ||||||||||||||||||||| ||||||||||||||    
T  42141630 ttttggacaactttctctctcatactcacatgatgctcttatcttctctct 42141580  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 350
Target Start/End: Original strand, 2323343 - 2323382
Alignment:
Q  311 tctctcatactcacatgatgcacttatcttctctcttcat 350  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  2323343 tctctcatactcacatgatgtacttatcatctctcttcat 2323382  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 347
Target Start/End: Complemental strand, 3263544 - 3263493
Alignment:
Q  296 ttttggacaatttcttctctcatactcacatgatgcacttatcttctctctt 347  Q
    ||||| ||||||| |||||||||||||||||||||  |||||| ||||||||    
T  3263544 ttttgtacaattttttctctcatactcacatgatggtcttatcctctctctt 3263493  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 350
Target Start/End: Complemental strand, 22920528 - 22920474
Alignment:
Q  296 ttttggacaatttcttctctcatactcacatgatgcacttatcttctctcttcat 350  Q
    |||||||||| ||  ||||||||||||||||||||  |||||| |||||||||||    
T  22920528 ttttggacaactttctctctcatactcacatgatgttcttatcatctctcttcat 22920474  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 38010907 - 38010959
Alignment:
Q  296 ttttggacaatttcttctctcatactcacatgatgcacttatcttctctcttc 348  Q
    ||||| |||||||  ||||||||||||||||||||  |||||| |||||||||    
T  38010907 ttttgtacaattttctctctcatactcacatgatggtcttatcctctctcttc 38010959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 50879645 - 50879682
Alignment:
Q  311 tctctcatactcacatgatgcacttatcttctctcttc 348  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  50879645 tctctcatactcacatgatggtcttatcttctctcttc 50879682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 7037520 - 7037468
Alignment:
Q  296 ttttggacaatttcttctctcatactcacatgatgcacttatcttctctcttc 348  Q
    ||||| |||||||  |||||||||||||| |||||  ||||||||||||||||    
T  7037520 ttttgtacaattttctctctcatactcacgtgatggtcttatcttctctcttc 7037468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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