View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11356_low_25 (Length: 348)

Name: NF11356_low_25
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11356_low_25
NF11356_low_25
[»] chr8 (12 HSPs)
chr8 (1-331)||(1979324-1979655)
chr8 (184-242)||(20154076-20154133)
chr8 (184-242)||(20203337-20203394)
chr8 (145-242)||(2517108-2517209)
chr8 (221-279)||(29072504-29072562)
chr8 (196-230)||(30153513-30153547)
chr8 (143-188)||(3066118-3066163)
chr8 (178-242)||(6501496-6501559)
chr8 (143-187)||(7187916-7187960)
chr8 (195-235)||(23489805-23489845)
chr8 (196-236)||(24362330-24362370)
chr8 (196-252)||(31551847-31551903)
[»] chr7 (11 HSPs)
chr7 (153-246)||(27012121-27012213)
chr7 (184-254)||(23948381-23948450)
chr7 (184-242)||(44287849-44287906)
chr7 (196-235)||(40688891-40688930)
chr7 (166-243)||(38957325-38957402)
chr7 (179-255)||(17285052-17285127)
chr7 (214-246)||(23112677-23112709)
chr7 (214-246)||(23112732-23112764)
chr7 (178-242)||(37775983-37776046)
chr7 (143-175)||(40714957-40714989)
chr7 (178-242)||(42720885-42720948)
[»] chr4 (5 HSPs)
chr4 (166-225)||(47665841-47665899)
chr4 (178-236)||(36768844-36768901)
chr4 (187-236)||(55258425-55258473)
chr4 (196-255)||(50699157-50699217)
chr4 (143-235)||(6424163-6424254)
[»] chr2 (8 HSPs)
chr2 (153-237)||(5461140-5461222)
chr2 (143-187)||(9956934-9956978)
chr2 (196-239)||(28341328-28341371)
chr2 (196-231)||(38738423-38738458)
chr2 (196-246)||(894053-894103)
chr2 (196-270)||(43886567-43886641)
chr2 (178-235)||(18841008-18841064)
chr2 (183-235)||(28369805-28369856)
[»] chr1 (5 HSPs)
chr1 (196-249)||(41319497-41319550)
chr1 (178-246)||(18556021-18556088)
chr1 (196-262)||(26777389-26777456)
chr1 (166-224)||(13810516-13810573)
chr1 (197-242)||(1118409-1118454)
[»] scaffold0027 (1 HSPs)
scaffold0027 (203-262)||(145901-145960)
[»] chr6 (4 HSPs)
chr6 (195-242)||(34625735-34625782)
chr6 (147-189)||(11602816-11602858)
chr6 (196-250)||(32577476-32577530)
chr6 (200-269)||(6294552-6294621)
[»] chr5 (4 HSPs)
chr5 (143-186)||(29816969-29817012)
chr5 (195-233)||(19045568-19045606)
chr5 (153-242)||(15086699-15086787)
chr5 (153-217)||(39219817-39219880)
[»] chr3 (6 HSPs)
chr3 (200-235)||(25086281-25086316)
chr3 (185-243)||(31221711-31221769)
chr3 (143-225)||(39981665-39981745)
chr3 (174-235)||(10268477-10268537)
chr3 (196-237)||(49636838-49636879)
chr3 (198-246)||(36301990-36302038)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 1979655 - 1979324
Alignment:
Q  1 ttggagagtaaatggtggtacttcaatttcaacatttgggttttgaagggnnnnnnn-gtttgtttgtattgaagagagaaaatagggctaacatattgt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||||||||    
T  1979655 ttggagagtaaatggtggtacttcaatttcaacatttgggttttgaagggttttttttgtttgtttgtattgaagagagaaaatagggctagcatattgt 1979556  T
Q  100 taattttcttttattttgagaaaaggggaaatgcatttgttggtgtagcacccacacctctgatcaaaggcgtgtccggtgtctgacactgacactatgt 199  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  1979555 taattttcttttattttgagaaaaggggaaatgcatttgttagtgtagcacccatacctctgatcaaaggcgtgtccggtgtctgacattgacactatgt 1979456  T
Q  200 gattacatttaattaattaattttttcaaattattaccggtgttgacttgttagtggcgtgtctggtgtccgtgcttcatgtaagagcttgactttgtac 299  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1979455 gattacatttaattaattaattttctcaaattattaccggtgttgacttgttagtggcgtgtctggtgtccgtgcttcatgtaagagcttgactttgtac 1979356  T
Q  300 gacatagttcgaatctgaacagggacagttgt 331  Q
    ||||||||||||||||||||||||||||||||    
T  1979355 gacatagttcgaatctgaacagggacagttgt 1979324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 20154076 - 20154133
Alignment:
Q  184 gacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgt 242  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||| || ||||||||||    
T  20154076 gacactgacac-atgtgattgcatttaattaattcattttttcaagtttttaccggtgt 20154133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 20203394 - 20203337
Alignment:
Q  184 gacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgt 242  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||| || ||||||||||    
T  20203394 gacactgacac-atgtgattgcatttaattaattcattttttcaagtttttaccggtgt 20203337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 2517209 - 2517108
Alignment:
Q  145 tagcacccacacctctgatcaaaggcgtgtccggtgtctgacactgacacta----tgtgattacatttaattaattaattttttcaaattattaccggt 240  Q
    |||||||||||| ||||||||||||| |||| ||| ||||||||  |||  |    |||  ||||||| |||||||| ||||| ||||||||||||||||    
T  2517209 tagcacccacacttctgatcaaaggcatgtctggtatctgacaccaacataacacgtgtagttacattcaattaattcattttctcaaattattaccggt 2517110  T
Q  241 gt 242  Q
    ||    
T  2517109 gt 2517108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 29072504 - 29072562
Alignment:
Q  221 tttttcaaattattaccggtgttgacttgttagtggcgtgtctggtgtccgtgcttcat 279  Q
    ||||||||||||||| |||||| ||| ||| |||| |||||| |||||| |||||||||    
T  29072504 tttttcaaattattatcggtgtcgacgtgtgagtgtcgtgtccggtgtctgtgcttcat 29072562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 30153513 - 30153547
Alignment:
Q  196 atgtgattacatttaattaattaattttttcaaat 230  Q
    |||||||||||||||||||||||||||||| ||||    
T  30153513 atgtgattacatttaattaattaattttttaaaat 30153547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 3066163 - 3066118
Alignment:
Q  143 tgtagcacccacacctctgatcaaaggcgtgtccggtgtctgacac 188  Q
    ||||||||  |||||||||||| ||||| |||||||||||||||||    
T  3066163 tgtagcactgacacctctgatctaaggcatgtccggtgtctgacac 3066118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 6501559 - 6501496
Alignment:
Q  178 gtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgt 242  Q
    ||||||||||| ||||| ||||| ||||||||||||| || ||| | ||||||||||||| ||||    
T  6501559 gtgtctgacaccgacac-atgtggttacatttaattatttcattctctcaaattattaccagtgt 6501496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 7187916 - 7187960
Alignment:
Q  143 tgtagcacccacacctctgatcaaaggcgtgtccggtgtctgaca 187  Q
    ||||||||| ||||||||||||||||||||||  | |||||||||    
T  7187916 tgtagcaccgacacctctgatcaaaggcgtgtatgttgtctgaca 7187960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 23489845 - 23489805
Alignment:
Q  195 tatgtgattacatttaattaattaattttttcaaattatta 235  Q
    |||||| |||||||||||||| | |||||||||||||||||    
T  23489845 tatgtggttacatttaattaaatcattttttcaaattatta 23489805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 24362370 - 24362330
Alignment:
Q  196 atgtgattacatttaattaattaattttttcaaattattac 236  Q
    ||||||||||||| |||||||| ||||||||||||| ||||    
T  24362370 atgtgattacattcaattaattcattttttcaaatttttac 24362330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 31551847 - 31551903
Alignment:
Q  196 atgtgattacatttaattaattaattttttcaaattattaccggtgttgacttgtta 252  Q
    ||||||||| ||| |||| ||| ||||| |||||||||||||||| ||||| |||||    
T  31551847 atgtgattatattcaatttattcattttctcaaattattaccggtattgacatgtta 31551903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 27012213 - 27012121
Alignment:
Q  153 acacctctgatcaaaggcgtgtccggtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgttgac 246  Q
    |||||||||||| ||||| | || |||||| ||||  ||||| |||||| ||||||||||||||| ||||| ||||||||| ||| ||||||||    
T  27012213 acacctctgatcgaaggcatatctggtgtccgacatagacac-atgtgaatacatttaattaattcattttctcaaattatgaccagtgttgac 27012121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 23948450 - 23948381
Alignment:
Q  184 gacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgttgacttgttagt 254  Q
    ||||||||||| || |||||||||| |||||||| ||||||||||||||||| | |||| ||| |||||||    
T  23948450 gacactgacac-atatgattacattcaattaattgattttttcaaattattatcagtgtcgacatgttagt 23948381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 44287906 - 44287849
Alignment:
Q  184 gacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgt 242  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||| || ||||||||||    
T  44287906 gacactgacac-atgtgattgcatttaattaattcattttttcaagtttttaccggtgt 44287849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 40688930 - 40688891
Alignment:
Q  196 atgtgattacatttaattaattaattttttcaaattatta 235  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  40688930 atgtgattacatttaattaattcattttatcaaattatta 40688891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 38957325 - 38957402
Alignment:
Q  166 aaggcgtgtccggtgtctgacactgacactatgtgattacatttaattaattaattttt-tcaaattattaccggtgtt 243  Q
    ||||||||||  ||||  ||||||||||| ||||||||||||| |||||||| |||||| ||||||||| ||| |||||    
T  38957325 aaggcgtgtctagtgtacgacactgacac-atgtgattacattcaattaatttatttttctcaaattatcaccagtgtt 38957402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 17285127 - 17285052
Alignment:
Q  179 tgtctgacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgttgacttgttagtg 255  Q
    |||||||||| ||||| ||||||||| ||| |||||  | ||| | |||||||||||  ||||||||||||||||||    
T  17285127 tgtctgacacagacac-atgtgattaaattgaattatatcattctctcaaattattattggtgttgacttgttagtg 17285052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 23112677 - 23112709
Alignment:
Q  214 aattaattttttcaaattattaccggtgttgac 246  Q
    ||||||||||||||||||||||||||| |||||    
T  23112677 aattaattttttcaaattattaccggtattgac 23112709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 23112732 - 23112764
Alignment:
Q  214 aattaattttttcaaattattaccggtgttgac 246  Q
    ||||||||||||||||||||||||||| |||||    
T  23112732 aattaattttttcaaattattaccggtattgac 23112764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 37776046 - 37775983
Alignment:
Q  178 gtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgt 242  Q
    |||||| |||||||||| |||||||||||||||||||  | ||||| |||||||| ||| |||||    
T  37776046 gtgtcttacactgacac-atgtgattacatttaattatgtcattttctcaaattactactggtgt 37775983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 40714957 - 40714989
Alignment:
Q  143 tgtagcacccacacctctgatcaaaggcgtgtc 175  Q
    ||||||||| |||||||||||||||||||||||    
T  40714957 tgtagcaccgacacctctgatcaaaggcgtgtc 40714989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 42720885 - 42720948
Alignment:
Q  178 gtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgt 242  Q
    ||||| ||||||||||| || | ||||||||||||||  | ||||||||||||||||| ||||||    
T  42720885 gtgtcagacactgacac-atataattacatttaattatgtgattttttcaaattattagcggtgt 42720948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 47665841 - 47665899
Alignment:
Q  166 aaggcgtgtccggtgtctgacactgacactatgtgattacatttaattaattaatttttt 225  Q
    ||||| |||||||||||  |||| ||||| ||||||||||||||||||||||||||||||    
T  47665841 aaggcatgtccggtgtccaacaccgacac-atgtgattacatttaattaattaatttttt 47665899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 36768844 - 36768901
Alignment:
Q  178 gtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattattac 236  Q
    ||||| ||||||||||| ||||||||||||| |||||||||||| | ||||||||||||    
T  36768844 gtgtcggacactgacac-atgtgattacattcaattaattaattctctcaaattattac 36768901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 55258473 - 55258425
Alignment:
Q  187 actgacactatgtgattacatttaattaattaattttttcaaattattac 236  Q
    |||||||| ||||||||||||||||||||||| |||||||||||| ||||    
T  55258473 actgacac-atgtgattacatttaattaattagttttttcaaatttttac 55258425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 50699217 - 50699157
Alignment:
Q  196 atgtgattacatttaattaattaatttttt-caaattattaccggtgttgacttgttagtg 255  Q
    ||||||||||||| |||||| ||||||||| |||||| ||||||||||| || ||||||||    
T  50699217 atgtgattacattcaattaactaatttttttcaaatttttaccggtgttaacgtgttagtg 50699157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 235
Target Start/End: Original strand, 6424163 - 6424254
Alignment:
Q  143 tgtagcacccacacctctgatcaaaggcgtgtccggtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattatta 235  Q
    ||||||||| |||  ||||||| ||||| |||  |||||||||||| ||||| |||||||| |||| |||||||| || |||| || ||||||    
T  6424163 tgtagcaccgacaattctgatcgaaggcatgtttggtgtctgacaccgacac-atgtgattgcattgaattaattcatctttttaagttatta 6424254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 237
Target Start/End: Original strand, 5461140 - 5461222
Alignment:
Q  153 acacctctgatcaaaggcgtgtccggtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattattacc 237  Q
    |||||| ||||| ||||  ||||| |||||||||| |||||  ||||||||||||| |||||||| ||| | |||||||||||||    
T  5461140 acacctttgatcgaaggtatgtccagtgtctgacattgaca--atgtgattacattcaattaatttattatctcaaattattacc 5461222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 9956934 - 9956978
Alignment:
Q  143 tgtagcacccacacctctgatcaaaggcgtgtccggtgtctgaca 187  Q
    ||||||||| || ||||||||||||||| ||||||||||||||||    
T  9956934 tgtagcaccgacgcctctgatcaaaggcatgtccggtgtctgaca 9956978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 28341371 - 28341328
Alignment:
Q  196 atgtgattacatttaattaattaattttttcaaattattaccgg 239  Q
    |||||||||||||||||||||| ||||| ||||| |||||||||    
T  28341371 atgtgattacatttaattaattcattttctcaaactattaccgg 28341328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 38738458 - 38738423
Alignment:
Q  196 atgtgattacatttaattaattaattttttcaaatt 231  Q
    |||||||||||||||||||||||||||| |||||||    
T  38738458 atgtgattacatttaattaattaattttctcaaatt 38738423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 894103 - 894053
Alignment:
Q  196 atgtgattacatttaattaattaattttttcaaattattaccggtgttgac 246  Q
    |||||||||  || |||||||||||||||||||||| ||||| ||||||||    
T  894103 atgtgattatgttcaattaattaattttttcaaatttttaccagtgttgac 894053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 43886641 - 43886567
Alignment:
Q  196 atgtgattacatttaattaattaattttttcaaattattaccggtgttgacttgttagtggcgtgtctggtgtcc 270  Q
    |||||||||| |||||| |||| ||| | | |||||||||| ||||| ||| ||||||||  |||||||||||||    
T  43886641 atgtgattacgtttaatcaattcattatcttaaattattactggtgtcgacgtgttagtgttgtgtctggtgtcc 43886567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 18841008 - 18841064
Alignment:
Q  178 gtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattatta 235  Q
    ||||||||||| |||||| ||| |||||| |||||||  |||||||||||||||||||    
T  18841008 gtgtctgacaccgacact-tgtaattacacttaattatgtaattttttcaaattatta 18841064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 28369805 - 28369856
Alignment:
Q  183 tgacactgacactatgtgattacatttaattaattaattttttcaaattatta 235  Q
    |||||||||||| |||| |||||||||| |||||| ||||| |||||||||||    
T  28369805 tgacactgacac-atgttattacatttatttaattcattttctcaaattatta 28369856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 41319497 - 41319550
Alignment:
Q  196 atgtgattacatttaattaattaattttttcaaattattaccggtgttgacttg 249  Q
    ||||||||||||| ||||||||| ||||| |||||||||| |||| ||||||||    
T  41319497 atgtgattacattcaattaattattttttacaaattattatcggttttgacttg 41319550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 246
Target Start/End: Original strand, 18556021 - 18556088
Alignment:
Q  178 gtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgttgac 246  Q
    ||||||||||||||||| ||||||||||| | |||||  | ||||| | ||||||||||||||||||||    
T  18556021 gtgtctgacactgacac-atgtgattacagtcaattatgtcattttattaaattattaccggtgttgac 18556088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 26777389 - 26777456
Alignment:
Q  196 atgtgattacatttaattaattaatttt-ttcaaattattaccggtgttgacttgttagtggcgtgtc 262  Q
    ||||||||||||| |||||| | ||||| |||||||||||| |||||||||||| | |||| ||||||    
T  26777389 atgtgattacattcaattaagtcatttttttcaaattattatcggtgttgacttctcagtgtcgtgtc 26777456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 13810573 - 13810516
Alignment:
Q  166 aaggcgtgtccggtgtctgacactgacactatgtgattacatttaattaattaattttt 224  Q
    ||||||||||||||||||||||| ||||| |||||||||| || ||| |||| ||||||    
T  13810573 aaggcgtgtccggtgtctgacaccgacac-atgtgattacgttcaataaattcattttt 13810516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 1118409 - 1118454
Alignment:
Q  197 tgtgattacatttaattaattaattttttcaaattattaccggtgt 242  Q
    |||||||||||| |||||||| ||||||||||||||| ||| ||||    
T  1118409 tgtgattacattcaattaattcattttttcaaattatcacccgtgt 1118454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 145960 - 145901
Alignment:
Q  203 tacatttaattaattaattttttcaaattattaccggtgttgacttgttagtggcgtgtc 262  Q
    |||||| |||||||| ||||| ||||| |||||||||||||||| ||| |||| ||||||    
T  145960 tacattgaattaatttattttctcaaactattaccggtgttgacatgtcagtgtcgtgtc 145901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 34625782 - 34625735
Alignment:
Q  195 tatgtgattacatttaattaattaattttttcaaattattaccggtgt 242  Q
    |||||||||||||| |||||||| ||||| ||||||||||| ||||||    
T  34625782 tatgtgattacattcaattaattcattttctcaaattattatcggtgt 34625735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 11602816 - 11602858
Alignment:
Q  147 gcacccacacctctgatcaaaggcgtgtccggtgtctgacact 189  Q
    ||||| ||||||||||||||||| |||||||||||| ||||||    
T  11602816 gcaccaacacctctgatcaaaggtgtgtccggtgtccgacact 11602858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 32577476 - 32577530
Alignment:
Q  196 atgtgattacatttaattaattaattttttcaaattattaccggtgttgacttgt 250  Q
    ||||||||||||| |||||||| ||||| |||||| || |||||| |||||||||    
T  32577476 atgtgattacattcaattaattcattttctcaaatcatcaccggtcttgacttgt 32577530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 6294552 - 6294621
Alignment:
Q  200 gattacatttaattaattaattttttcaaattattaccggtgttgacttgttagtggcgtgtctggtgtc 269  Q
    |||| |||| |||||||| ||||| ||||||||||| | |||||||  ||| |||| |||||||||||||    
T  6294552 gattgcattcaattaattcattttctcaaattattatcagtgttgatgtgtgagtgccgtgtctggtgtc 6294621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 29816969 - 29817012
Alignment:
Q  143 tgtagcacccacacctctgatcaaaggcgtgtccggtgtctgac 186  Q
    ||||||||| |||||||||||||||| | |||||||||||||||    
T  29816969 tgtagcaccgacacctctgatcaaagacatgtccggtgtctgac 29817012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 19045606 - 19045568
Alignment:
Q  195 tatgtgattacatttaattaattaattttttcaaattat 233  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  19045606 tatgtgattacatttaattaattcatttttttaaattat 19045568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 15086787 - 15086699
Alignment:
Q  153 acacctctgatcaaaggcgtgtccggtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgt 242  Q
    |||||| |||||||| | |||||||||||| |||||  |||| |||||||||| || || ||||| | ||| ||||||||||||| ||||    
T  15086787 acacctttgatcaaatgtgtgtccggtgtccgacaccaacac-atgtgattacgttcaaataattcactttctcaaattattacccgtgt 15086699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 39219817 - 39219880
Alignment:
Q  153 acacctctgatcaaaggcgtgtccggtgtctgacactgacactatgtgattacatttaattaatt 217  Q
    |||||||||||||||||| ||||||||||| ||||| || | |||||||||| |||  |||||||    
T  39219817 acacctctgatcaaaggcatgtccggtgtccgacacagata-tatgtgattaaattcgattaatt 39219880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 235
Target Start/End: Original strand, 25086281 - 25086316
Alignment:
Q  200 gattacatttaattaattaattttttcaaattatta 235  Q
    ||||||||| ||||||||||||||||||||||||||    
T  25086281 gattacattcaattaattaattttttcaaattatta 25086316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 31221769 - 31221711
Alignment:
Q  185 acactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgtt 243  Q
    |||||||||| |||||||||| || |||||||  ||| || ||||||||||||||||||    
T  31221769 acactgacacaatgtgattacgttaaattaatctattattccaaattattaccggtgtt 31221711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 39981665 - 39981745
Alignment:
Q  143 tgtagcacccacacctctgatcaaaggcgtgtccggtgtctgacactgacactatgtgattacatttaattaattaatttttt 225  Q
    ||||||||  ||||||||| || |||||||| |||||||| || || ||||| ||||| ||||||| ||||||||||||||||    
T  39981665 tgtagcactgacacctctgttcgaaggcgtg-ccggtgtccgaaaccgacac-atgtgcttacattaaattaattaatttttt 39981745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 10268477 - 10268537
Alignment:
Q  174 tccggtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattatta 235  Q
    |||||||||||||||||||||| ||| |||||| | |||||  | |||||||||||||||||    
T  10268477 tccggtgtctgacactgacact-tgtaattacactaaattatgtgattttttcaaattatta 10268537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 49636838 - 49636879
Alignment:
Q  196 atgtgattacatttaattaattaattttttcaaattattacc 237  Q
    ||||||||||||| |||||||| ||||| |||||||||||||    
T  49636838 atgtgattacattcaattaattcattttctcaaattattacc 49636879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 36302038 - 36301990
Alignment:
Q  198 gtgattacatttaattaattaattttttcaaattattaccggtgttgac 246  Q
    ||||||||||| |||||||| ||||| ||| |||||||||| |||||||    
T  36302038 gtgattacattcaattaatttattttctcacattattaccgatgttgac 36301990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University