View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11356_low_27 (Length: 343)
Name: NF11356_low_27
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 47320436 - 47320103
Alignment:
| Q |
16 |
ttaacaactattgaatgtgattcattctgtttccaaatcttatagtgaaaattataaacatctttcttgtattatgtaaagacagaaagatcgaaaattt |
115 |
Q |
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| T |
47320436 |
ttaacaactattgaatgtgattcattctgtttccaaatcttatagtgaaaattataaacatctttcctgtattatttaa-gacagaaagatcgaaaattt |
47320338 |
T |
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| Q |
116 |
caagatgagttgtgctacgaaaataccatctgattcaatctctatgcacttgatgtaaa-tgtatagtttaaagaattcgcactcaacaaagtacaaagt |
214 |
Q |
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| T |
47320337 |
caagatgagttgtgctatgaaaataccatctgattcaatctctatgcacttgatgtaaagtgtatagtttaaagaattcgcactca-------acaaagt |
47320245 |
T |
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| Q |
215 |
atacaatggaag-nnnnnnnnntactgtgaaattgacacataacagatagat---------------------caaactaggaattgctacatgcaggat |
292 |
Q |
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| T |
47320244 |
atacaatggaagaaaaaaaaaatactgtgaaattgacacataacagatagatcaaactaggaattttaaagatcaaactaggaattgctacatgcaggat |
47320145 |
T |
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| Q |
293 |
tgtagtcaaacttgttattgttcgtcatctttctcttcatct |
334 |
Q |
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| T |
47320144 |
tgtagtcaaacttgttattgttcgtcatctttctcttcatct |
47320103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 325
Target Start/End: Complemental strand, 47316662 - 47316597
Alignment:
| Q |
260 |
atagatcaaactaggaattgctacatgcaggattgtagtcaaacttgttattgttcgtcatctttc |
325 |
Q |
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| T |
47316662 |
atagatcaaactaggaatttctatacgcacgattgtaatcaaacttattattgttcatcatctttc |
47316597 |
T |
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