View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11356_low_33 (Length: 259)
Name: NF11356_low_33
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_low_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 42228932 - 42229156
Alignment:
| Q |
13 |
gagatgaatatatacaactcgttgatcactctttttaggccaacatcatctaacttggacnnnnnnnntacaaatcacgatcaacacacattacaattcc |
112 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
42228932 |
gagataaatatatacaactcgttgatcactcgttttaggccaacatcatctaacttggacaaaaaaa-tacaaatcacgatcaacacacattacaatttc |
42229030 |
T |
|
| Q |
113 |
tttacttt-gaccctgaagtttacaacaatgtatgtatgtatggtttgagattagtttaatctgttagcaatattagtcgtaccttctgctgttgacttt |
211 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42229031 |
tttacttttgaccctgaagtttacaacaatgt----atgtatggtttgagattagtttaatctgttagcaatattagtcgtaccttctgctgttgacttt |
42229126 |
T |
|
| Q |
212 |
ccaactagtttgtttttatgattggctatt |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
42229127 |
ccaactagtttgtttttatgattggctatt |
42229156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 208
Target Start/End: Original strand, 42228072 - 42228195
Alignment:
| Q |
81 |
tacaaatcacgatcaacacacattacaattcctttactttgaccctgaagtttacaacaatgtatgtatgtatggtttgagattagtttaatctgttagc |
180 |
Q |
| |
|
|||||||||||||||||| | || || ||| ||| |||||||| | ||||||||| |||||| ||||||||||||||||| ||| |||| | ||| |
|
|
| T |
42228072 |
tacaaatcacgatcaacaaatatatcagttcatttgctttgaccttaaagtttacagcaatgt----atgtatggtttgagattgatttcatctttgagc |
42228167 |
T |
|
| Q |
181 |
aatattagtcgtaccttctgctgttgac |
208 |
Q |
| |
|
|||||||||| |||||| || ||||||| |
|
|
| T |
42228168 |
aatattagtcataccttgtgttgttgac |
42228195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University