View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11356_low_35 (Length: 255)
Name: NF11356_low_35
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 7 - 244
Target Start/End: Original strand, 41509650 - 41509886
Alignment:
| Q |
7 |
aaatgttctgaattcgaattcaactttgagaatgtaacaatattaaatttagtcttatcatcgtattacttgaaagtttgtggttcattgcatatcttac |
106 |
Q |
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| T |
41509650 |
aaatgttctaaattcgaattcaactttgagaatgtaacaatatcaa-tttaatcttatcatcgtattacttaaaagtttgtggttcattgcatatcttac |
41509748 |
T |
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| Q |
107 |
taaagaaattaacatatatagttgcatgcagaggacatgacaacaatnnnnnnnnntcaattttatttgtttataataaagtagcaaacatcacaactct |
206 |
Q |
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| T |
41509749 |
taaagaaattaacatatatagttgcatgcagaggacatgacaacaataaaataaaatcaattttatttgtttataataaagtagcaaacatcacaactct |
41509848 |
T |
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| Q |
207 |
tttaaattgaataataaatagactattacttttcccac |
244 |
Q |
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| T |
41509849 |
ttcgaattgaataataaatagactattacttttcccac |
41509886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 9074254 - 9074291
Alignment:
| Q |
17 |
aattcgaattcaactttgagaatgtaacaatattaaat |
54 |
Q |
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| T |
9074254 |
aatttgaattcaaccttgagaatgtaacaatattaaat |
9074291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 251
Target Start/End: Complemental strand, 48066053 - 48066025
Alignment:
| Q |
223 |
aatagactattacttttcccaccctatgc |
251 |
Q |
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| T |
48066053 |
aatagactattacttttcccaccctatgc |
48066025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 251
Target Start/End: Original strand, 49324720 - 49324748
Alignment:
| Q |
223 |
aatagactattacttttcccaccctatgc |
251 |
Q |
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| T |
49324720 |
aatagactattacttttcccaccctatgc |
49324748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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