View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11356_low_36 (Length: 248)
Name: NF11356_low_36
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 19296680 - 19296919
Alignment:
| Q |
1 |
acaaggaaccaaaatccaacatggtcggaaattaaaactagaaatgaataaacagaaacctaatttggtgctcaatctctccctcacattagaaaatcaa |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||| |
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| T |
19296680 |
acaaggaaccaaaatccaacaaggtcggaaattaaaactagaaatgaataaacagaaatccaatttggtgctcaatctctccctcacattagaaaaccaa |
19296779 |
T |
|
| Q |
101 |
attcaaaaccttatatgaagataaggaaaaggtaaactcgccaagtttgagtggccaatgagaaggaaaaatggtggaactgatatgcaagagagatcct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||| |
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| T |
19296780 |
attcaaaaccttatatgaagataaggaaaaggtaaactcaccaagtttgagtggccaatgagaaggaaaaa---tagaactgataggcaagagagatcct |
19296876 |
T |
|
| Q |
201 |
ttcgacacaagccttcttcctttacgccacagattcttctcac |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19296877 |
ttcgacacaagccttcttcctttacgccacagattcttatcac |
19296919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 54309482 - 54309344
Alignment:
| Q |
1 |
acaaggaaccaaaatccaacatggtcggaaattaaaactagaaatgaataaacagaaacctaatttggtgctcaatctctccctcacattagaaaatcaa |
100 |
Q |
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|||||||||||||| ||||||| ||| ||||||||||||||||||| |||| |||||| |||||||||||| ||||||||||||||||| |||| ||| |
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| T |
54309482 |
acaaggaaccaaaaaccaacatagtcagaaattaaaactagaaatgggtaaaaggaaacccaatttggtgctcgatctctccctcacattataaaaccaa |
54309383 |
T |
|
| Q |
101 |
attcaaaaccttatatgaagataaggaaaaggtaaactc |
139 |
Q |
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| T |
54309382 |
attcaaaaccatatatgaagataaggaaaaggtaaactc |
54309344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 155
Target Start/End: Complemental strand, 31109772 - 31109643
Alignment:
| Q |
26 |
cggaaattaaaactagaaatgaataaacagaaacctaatttggtgctcaatctctccctcacattagaaaatcaaattcaaaaccttatatgaagataag |
125 |
Q |
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||||||||||||||| ||| | ||||| |||||| ||||||| ||||||||||||| |||||||||||| ||||||||||||| ||| |||||||||| |
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| T |
31109772 |
cggaaattaaaactaaaaagggataaaaggaaacccaatttggcgctcaatctctccttcacattagaaacccaaattcaaaaccatatttgaagataag |
31109673 |
T |
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| Q |
126 |
gaaaaggtaaactcgccaagtttgagtggc |
155 |
Q |
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|||||| ||||||| || ||| |||||||| |
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| T |
31109672 |
gaaaagctaaactcaccgagtctgagtggc |
31109643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 31116197 - 31116326
Alignment:
| Q |
26 |
cggaaattaaaactagaaatgaataaacagaaacctaatttggtgctcaatctctccctcacattagaaaatcaaattcaaaaccttatatgaagataag |
125 |
Q |
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||||||||||||||| ||| | ||||| |||||| ||||||| ||||||||||||| |||||||||||| ||||||||||||| ||| |||||||||| |
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| T |
31116197 |
cggaaattaaaactaaaaagggataaaaggaaacccaatttggcgctcaatctctccttcacattagaaacccaaattcaaaaccatatttgaagataag |
31116296 |
T |
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| Q |
126 |
gaaaaggtaaactcgccaagtttgagtggc |
155 |
Q |
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|||||| ||||||| || ||| |||||||| |
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|
| T |
31116297 |
gaaaagctaaactcaccgagtctgagtggc |
31116326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 24980890 - 24980806
Alignment:
| Q |
157 |
aatgagaaggaaaaatggtggaactgatatgcaagagagatccttt-cgacacaagccttcttcctttacgccacagattcttctcac |
243 |
Q |
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||||||||||||||||| |||||||||||||| | ||| ||| ||||||| ||||||||||||| ||||| |||||||| |||| |
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| T |
24980890 |
aatgagaaggaaaaatga---aactgatatgcaaggaatatctttttcgacacatgccttcttcctttccgccagagattcttatcac |
24980806 |
T |
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