View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11356_low_40 (Length: 231)

Name: NF11356_low_40
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11356_low_40
NF11356_low_40
[»] chr6 (11 HSPs)
chr6 (11-128)||(17095651-17095768)
chr6 (11-73)||(16655779-16655841)
chr6 (11-117)||(16870317-16870423)
chr6 (11-68)||(16784994-16785051)
chr6 (17-80)||(16794920-16794983)
chr6 (11-68)||(16778898-16778955)
chr6 (11-73)||(16558465-16558525)
chr6 (11-70)||(17067201-17067260)
chr6 (167-202)||(16985033-16985068)
chr6 (93-156)||(16985081-16985144)
chr6 (19-68)||(16841550-16841599)
[»] chr3 (2 HSPs)
chr3 (11-80)||(38941733-38941802)
chr3 (19-67)||(7055669-7055717)
[»] scaffold0256 (1 HSPs)
scaffold0256 (11-68)||(6881-6938)
[»] scaffold0133 (3 HSPs)
scaffold0133 (11-68)||(6222-6279)
scaffold0133 (11-80)||(10558-10627)
scaffold0133 (29-68)||(15867-15906)
[»] chr2 (1 HSPs)
chr2 (22-70)||(20151581-20151629)
[»] chr8 (1 HSPs)
chr8 (19-80)||(13375792-13375853)


Alignment Details
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 17095768 - 17095651
Alignment:
Q  11 ggagcagagatgcaagagaggaataggtgaagattggcataaaatagctcacattcctgattttgaattgtatgaatctg-tg--aaaccaacattttgt 107  Q
    |||| ||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||   ||| ||| ||  |||||||||||| ||    
T  17095768 ggagaagagatgtaagagaggaataggtgaagattggcattagatagctcacattcctgaatttgaattg---gaaactgatgcaaaaccaacatttcgt 17095672  T
Q  108 ggtaatttaagttaatttaat 128  Q
    |||||||||| ||||||||||    
T  17095671 ggtaatttaatttaatttaat 17095651  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 16655841 - 16655779
Alignment:
Q  11 ggagcagagatgcaagagaggaataggtgaagattggcataaaatagctcacattcctgattt 73  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16655841 ggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcctgattt 16655779  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 16870317 - 16870423
Alignment:
Q  11 ggagcagagatgcaagagaggaataggtgaagattggcataaaatagctcacattcctgattttgaattgtatgaatctg---tgaaaccaacattttgt 107  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | |||   |||||||     |||||||||||||||    
T  16870317 ggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcctgaattttatttg---gaatctgataaaaaaccaacattttgt 16870413  T
Q  108 ggtaatttaa 117  Q
    ||||||||||    
T  16870414 ggtaatttaa 16870423  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 16785051 - 16784994
Alignment:
Q  11 ggagcagagatgcaagagaggaataggtgaagattggcataaaatagctcacattcct 68  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16785051 ggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct 16784994  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 16794983 - 16794920
Alignment:
Q  17 gagatgcaagagaggaataggtgaagattggcataaaatagctcacattcctgattttgaattg 80  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||    
T  16794983 gagatgcaagagaggaaaaggtgaagattggcataagatagctcacgttcctgaatttgaattg 16794920  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 16778955 - 16778898
Alignment:
Q  11 ggagcagagatgcaagagaggaataggtgaagattggcataaaatagctcacattcct 68  Q
    |||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  16778955 ggagaagagatgcaagagaggaaaaggtgaagattggcataagatagctcacattcct 16778898  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 16558465 - 16558525
Alignment:
Q  11 ggagcagagatgcaagagaggaataggtgaagattggcataaaatagctcacattcctgattt 73  Q
    |||| |||||||||||||  |||||||||| ||||||||||| ||||||||||||||||||||    
T  16558465 ggagaagagatgcaagag--gaataggtgacgattggcataagatagctcacattcctgattt 16558525  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 17067260 - 17067201
Alignment:
Q  11 ggagcagagatgcaagagaggaataggtgaagattggcataaaatagctcacattcctga 70  Q
    |||| ||||||  |||| ||||| ||||||||||||||||||||||||||||||||||||    
T  17067260 ggagaagagattgaagataggaaaaggtgaagattggcataaaatagctcacattcctga 17067201  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 202
Target Start/End: Complemental strand, 16985068 - 16985033
Alignment:
Q  167 actatatcaaatgatatggtgtgattttagacttat 202  Q
    |||||||||||| |||||||||||||||||||||||    
T  16985068 actatatcaaattatatggtgtgattttagacttat 16985033  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 16985144 - 16985081
Alignment:
Q  93 aaaccaacattttgtggtaatttaagttaatttaatttaacgaatccctttaatttattccttt 156  Q
    |||||||||||   ||||||||||| |||||||||||||| ||| || |||| |||||||||||    
T  16985144 aaaccaacattccctggtaatttaatttaatttaatttaaggaagccttttattttattccttt 16985081  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 16841599 - 16841550
Alignment:
Q  19 gatgcaagagaggaataggtgaagattggcataaaatagctcacattcct 68  Q
    ||||||||| || || ||| |||||||||||||| |||||||||||||||    
T  16841599 gatgcaagaaagaaacaggggaagattggcataagatagctcacattcct 16841550  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 38941733 - 38941802
Alignment:
Q  11 ggagcagagatgcaagagaggaataggtgaagattggcataaaatagctcacattcctgattttgaattg 80  Q
    |||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||    
T  38941733 ggagaagagatgcaagagaggaaaaggtgaagattggcataagatagctcacattcctgaatttgaattg 38941802  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 7055669 - 7055717
Alignment:
Q  19 gatgcaagagaggaataggtgaagattggcataaaatagctcacattcc 67  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  7055669 gatgcaagagaggagtaggtgaagattggcataagatagctcacattcc 7055717  T

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Target: scaffold0256 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 6938 - 6881
Alignment:
Q  11 ggagcagagatgcaagagaggaataggtgaagattggcataaaatagctcacattcct 68  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6938 ggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct 6881  T

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Target: scaffold0133 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 6279 - 6222
Alignment:
Q  11 ggagcagagatgcaagagaggaataggtgaagattggcataaaatagctcacattcct 68  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6279 ggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct 6222  T

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Target: scaffold0133; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 10627 - 10558
Alignment:
Q  11 ggagcagagatgcaagagaggaataggtgaagattggcataaaatagctcacattcctgattttgaattg 80  Q
    |||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||  ||||||||    
T  10627 ggagaagagatgcaagagaggtataggtgaagattggcataagatagctcacattcctgaagttgaattg 10558  T

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Target: scaffold0133; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 15906 - 15867
Alignment:
Q  29 aggaataggtgaagattggcataaaatagctcacattcct 68  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  15906 aggaaaaggtgaagattggcataagatagctcacattcct 15867  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 20151629 - 20151581
Alignment:
Q  22 gcaagagaggaataggtgaagattggcataaaatagctcacattcctga 70  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  20151629 gcaagagaggaataggtgaagattggcataagatagctaacattcctga 20151581  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 13375853 - 13375792
Alignment:
Q  19 gatgcaagagaggaataggtgaagattggcataaaatagctcacattcctgattttgaattg 80  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||||| |||||  ||||||||    
T  13375853 gatgcaagagaggaataggagaagattgggataagatagctcacatacctgaagttgaattg 13375792  T

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