View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11356_low_41 (Length: 229)
Name: NF11356_low_41
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_low_41 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 107 - 229
Target Start/End: Original strand, 24122771 - 24122893
Alignment:
| Q |
107 |
ataaagagctataaatacccatcttgggatcattataaaggcattacataaacaatttctaatattgtactgactacaagtatagttgtggaccgtcaat |
206 |
Q |
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| T |
24122771 |
ataaagagctataaatacccatcttgggatcattataaaggcatcacataaacagtttctaatattgtactcactgcaagtacagttgtggaccgtcaat |
24122870 |
T |
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| Q |
207 |
atattcctaaggacatgcaagcc |
229 |
Q |
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| T |
24122871 |
atattcctaaggacatgcaagcc |
24122893 |
T |
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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 21926658 - 21926753
Alignment:
| Q |
11 |
taccgaggaaatagttcctcgaaattacgtctatttaacgagaaacaatggtttctcggaattttttggtcggaattgccttcgtttcttgtagtg |
106 |
Q |
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| T |
21926658 |
taccgaggaaaaagttgctcggaattacctctatttagcgagaaacaatggttcctcggaattttttggtcggaattactttcatttcttgtagtg |
21926753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 26970810 - 26970867
Alignment:
| Q |
51 |
agaaacaatggtttctcggaattttttggtcggaattgccttcgtttcttgtagtgat |
108 |
Q |
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| T |
26970810 |
agaaacaaagtttcctcgaaatttgttggtcggaattaccttcatttcttgtagtgat |
26970867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 41100937 - 41100896
Alignment:
| Q |
65 |
ctcggaattttttggtcggaattgccttcgtttcttgtagtg |
106 |
Q |
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| T |
41100937 |
ctcgaaattttttggtcggaattaccttcatttcttgtagtg |
41100896 |
T |
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