View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11356_low_47 (Length: 218)
Name: NF11356_low_47
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 5617787 - 5618002
Alignment:
| Q |
1 |
tggaggttaaggccatgcttgatgagcatgcagttggatggggattgaagaaagaagatgaatttcttgtgcttacttggaaagggcataatgttatatt |
100 |
Q |
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| T |
5617787 |
tggaggttaaggccatgcttgatgagcatgcagttggatggggattgaagaaagaagacgagtttcttgtgcttacttggaaagggcataatgttatatt |
5617886 |
T |
|
| Q |
101 |
tgcttctgcttggttaccttcttgaccatttttcacactatgtatgagtagcaacattttatttacttatgtaggttgtggctttttaggtttaggatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5617887 |
tgcttctgcttggttaccttcttgaccatttttcacactatgtatgagtagcaacattttatttacttatgtaggttgtggctttttaggtttaggatgg |
5617986 |
T |
|
| Q |
201 |
tcattataattcttct |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
5617987 |
tcattataattcttct |
5618002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 21163074 - 21163289
Alignment:
| Q |
1 |
tggaggttaaggccatgcttgatgagcatgcagttggatggggattgaagaaagaagatgaatttcttgtgcttacttggaaagggcataatgttatatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
21163074 |
tggaggttaaggccatgcttgatgagcatgcagttggatggggattgaagaaagaagacgagtttcttgtgcttacttggaaagggcataatgttatatt |
21163173 |
T |
|
| Q |
101 |
tgcttctgcttggttaccttcttgaccatttttcacactatgtatgagtagcaacattttatttacttatgtaggttgtggctttttaggtttaggatgg |
200 |
Q |
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| T |
21163174 |
tgcttctgcttggttaccttcttgaccatttttcacactatgtatgagtagcaacattttatttacttatgtaggttgtggctttttaggtttaggatgg |
21163273 |
T |
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| Q |
201 |
tcattataattcttct |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
21163274 |
tcattataattcttct |
21163289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 39823616 - 39823512
Alignment:
| Q |
15 |
atgcttgatgagcatgcagttggatggggattgaagaaagaagatgaatttcttgtgcttacttggaaagggcataatgttatatttgcttctgcttggt |
114 |
Q |
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||||||||||| ||||| | ||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||| | |||||||||||||||| |
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| T |
39823616 |
atgcttgatgaacatgctgctggatggggattgaagaaagaagatgagcatattgtgcttacttggaaaggccataatgttgtttttgcttctgcttggt |
39823517 |
T |
|
| Q |
115 |
tacct |
119 |
Q |
| |
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||||| |
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|
| T |
39823516 |
tacct |
39823512 |
T |
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