View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11356_low_6 (Length: 719)
Name: NF11356_low_6
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_low_6 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: scaffold0012 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 7 - 653
Target Start/End: Complemental strand, 145856 - 145210
Alignment:
| Q |
7 |
tgagatgaagatctacaagtctcatgttgatctcgaaacccagttcagacatcctaattgtcaaaattgtgaattactgaaccagtaaagttgactgcgg |
106 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
145856 |
tgagatgaagatctacaagtctcatgttggtctcgaaacccagttcagacatcctaattgtcaaaattgtgaattactgaaccagtaaagttgactgcgg |
145757 |
T |
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| Q |
107 |
gtcagaattccnnnnnnncatcttagacagaacaatagcagacagtcacatccagatatagcagtatgaacaccaaatgtttactaaagaatcaatgact |
206 |
Q |
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| T |
145756 |
gtcagaattcctttttttcatcttagacagaacaatagcagacagtcacatccaacaatagcagtatgaaaaccaaatgtttactaaagaatcaatgact |
145657 |
T |
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| Q |
207 |
gaaaatagaacaccatcacaaaaagctagtttcttcaattacattttccacacaagaagctactgggtaattgtacatgagattcagccaaggtaaggca |
306 |
Q |
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| T |
145656 |
gaaaatagaacaccatcacaagaagctagtttcttcaattacattttccacacaagaagctactggataattgtacatgagatgcagccaaggtaaggca |
145557 |
T |
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| Q |
307 |
cataaaaaatttcttagacttcaaaactctcttaacatgtaacattgtaacataaaccagaccaatttaacaaacacctaacattcaaactcaaccacaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
145556 |
cataaaaaatttcttagacttcaaaactctcttaacatgtaacattgtaacataaaccagaccaatttaacaaacacctaacattcaaactcaaccgcaa |
145457 |
T |
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| Q |
407 |
tcaatctagagtattatttacaaaaatagttatataaaagttccattccaaatcattctatagtattatttatacaaatctaacaaacacagaacattca |
506 |
Q |
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| T |
145456 |
tcaatctagagtattatttacaaaaatagttatataaaagttccattccaaatcattctatagtattatttatacaaatctaacaaacacagaacattca |
145357 |
T |
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| Q |
507 |
gattccaccacaaattttactttataaagatactgatttcacaaatccagatcaagctctggctccattaaagcattcaatccacctttattaaaaacaa |
606 |
Q |
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| T |
145356 |
gattccaccacaaatcttactttataaagatactgatttcacaaatccagatcaagctctggctccattaaagcattcaatccacctttattaaaaacaa |
145257 |
T |
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| Q |
607 |
ttcaaaatcaaatctttctaactcccacgggttatttcatgaggctc |
653 |
Q |
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| T |
145256 |
ttcaaaatcaaatctttctaactcccacgggttatttcatgatgctc |
145210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 559 - 597
Target Start/End: Original strand, 35276541 - 35276579
Alignment:
| Q |
559 |
caagctctggctccattaaagcattcaatccacctttat |
597 |
Q |
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| T |
35276541 |
caagctcaggctccattaaagcatccaatccacctttat |
35276579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 279 - 308
Target Start/End: Original strand, 35276223 - 35276252
Alignment:
| Q |
279 |
gtacatgagattcagccaaggtaaggcaca |
308 |
Q |
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| T |
35276223 |
gtacatgagattcagccaaggtaaggcaca |
35276252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 601 - 631
Target Start/End: Original strand, 21891608 - 21891638
Alignment:
| Q |
601 |
aaacaattcaaaatcaaatctttctaactcc |
631 |
Q |
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| T |
21891608 |
aaacaattcaaaatcaaatctttctaactcc |
21891638 |
T |
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