View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11356_low_8 (Length: 548)
Name: NF11356_low_8
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 94 - 459
Target Start/End: Complemental strand, 46464180 - 46463816
Alignment:
| Q |
94 |
aaccatatcgatccttcactaaaaatttaattcagtcgtatacggnnnnnnnnaaccatatcggtccttcagaaagacaacttagcccttaagtcataaa |
193 |
Q |
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| T |
46464180 |
aaccatatcggtccttcactaaaaatttaattcagtcgtatacggttttttttaaccatatcgatccttcagaaagacaacttagcccttaagtcataaa |
46464081 |
T |
|
| Q |
194 |
aatgtcataaactaatttannnnnnnnacatacattgaattggaccgtgaaaaaattgcgagctcgagttttgagtggtctataaataaattggggtctt |
293 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46464080 |
aatgtcataaactaatttactttttt-acatacattgaattgaaccgtgaaaaaattgcgagctcgagttttgagtggtctataaataaattggggtctt |
46463982 |
T |
|
| Q |
294 |
tactagtttattttcagtttgagcaatatcattgttttgcttacattactacactttgtagcgggaa---accactgagccattgctactcttgttcgct |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46463981 |
tactagtttattttcagtttgagcaatatcattgttttgcttacat---tacactttgtagcgggaaaccaccactgagccattgctactcttgttcgct |
46463885 |
T |
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| Q |
391 |
cttcaaccatgtctcaatccaaatacgatgaacctgataaagcgtatgaaatcgctgaactcatcgcca |
459 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46463884 |
cttcaaccatgtctcaatccaaatacgatgaacctgataaagcgtatgaaatcgctgaactcatcgcca |
46463816 |
T |
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