View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11356_low_9 (Length: 547)
Name: NF11356_low_9
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 536
Target Start/End: Complemental strand, 33833942 - 33833422
Alignment:
| Q |
18 |
aaattatacttattcaactcatttgttcatatctgatgatannnnnnn-gttccacagccttgttcaataggatttgccactggtggaaaaaccttcttt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33833942 |
aaattatacttattcaactcatttgttcatatctgatgatattttttttgttccacagccttgttcaataggatttgccactggtggaaaaaccttcttt |
33833843 |
T |
|
| Q |
117 |
ttgtggggaggttgcatgatggcaagtagcttctaccnnnnnnnnnnnnnnnnggtttataaaaatacttgcattctaactattcannnnnnnctacaga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||| ||| ||| |
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| T |
33833842 |
ttgtggggaggttgcatgatggcaagtagcttctaccttttttctttttctttggtgtataaaaatacttgcattctaactgttcatttttttctaaaga |
33833743 |
T |
|
| Q |
217 |
tgcatgctgaagactttaggcaagataattgtggtgtagtctcagaacttcgaaatggtggatattctgatgatatgactcttgcagccatagctggtga |
316 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33833742 |
tgcatgctgaagactttaggcaagataattgtggtgtagtctcagaacttcaaaatggtggatattctgatgatatgactcttgcagccatagctggtga |
33833643 |
T |
|
| Q |
317 |
gtaatcaatactactaaaactgttatattaacactttgtgagcatcatataacaaccatatcagcatttctcattgaaaataacgagtgttcaaatagaa |
416 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33833642 |
gtaatcaatactattaaaactgttatattaacactttgtgagcatcatataacaaccatatcagcatttctcattgaaaataacgagtgttcaaatagaa |
33833543 |
T |
|
| Q |
417 |
agatactgcgatcactctacagccggagactttggcaaaattggccaagctccgcgatcaaatatgtgtgtactttatttgcg-nnnnnnnnccgtattt |
515 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
33833542 |
agatactgcgatcactctacaaccggagactttggcaaaattggccaagctctgcgatcaaatatgtgtgtactttatttgcgttttttttttcgtattt |
33833443 |
T |
|
| Q |
516 |
attatataggtctagattcat |
536 |
Q |
| |
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||||||||||||||||||||| |
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| T |
33833442 |
attatataggtctagattcat |
33833422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 213 - 314
Target Start/End: Original strand, 43155855 - 43155956
Alignment:
| Q |
213 |
cagatgcatgctgaagactttaggcaagataattgtggtgtagtctcagaacttcgaaatggtggatattctgatgatatgactcttgcagccatagctg |
312 |
Q |
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||||||||||| || ||||||||||||||| || |||||||||||| | |||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43155855 |
cagatgcatgccgatgactttaggcaagatcgttatggtgtagtctcgggacttaaagatggtggatattctgatgatatgactcttgcagccatagctg |
43155954 |
T |
|
| Q |
313 |
gt |
314 |
Q |
| |
|
|| |
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|
| T |
43155955 |
gt |
43155956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 213 - 314
Target Start/End: Original strand, 43143749 - 43143850
Alignment:
| Q |
213 |
cagatgcatgctgaagactttaggcaagataattgtggtgtagtctcagaacttcgaaatggtggatattctgatgatatgactcttgcagccatagctg |
312 |
Q |
| |
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||||||||||| || ||||||||||||||| || |||||||||||| | |||| | |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43143749 |
cagatgcatgccgatgactttaggcaagatcgttatggtgtagtctcgggacttaaagatggtggatattttgatgatatgactcttgcagccatagctg |
43143848 |
T |
|
| Q |
313 |
gt |
314 |
Q |
| |
|
|| |
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|
| T |
43143849 |
gt |
43143850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 43155717 - 43155794
Alignment:
| Q |
71 |
acagccttgttcaataggatttgccactggtggaaaaaccttctttttgtggggaggttgcatgatggcaagtagctt |
148 |
Q |
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|||||| ||||| || || |||||||||||||||| ||| |||||| | |||||||| || ||||||||||||||||| |
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| T |
43155717 |
acagccctgttcgatgggctttgccactggtggaagaacattctttctttggggaggctgtatgatggcaagtagctt |
43155794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 43143611 - 43143682
Alignment:
| Q |
71 |
acagccttgttcaataggatttgccactggtggaaaaaccttctttttgtggggaggttgcatgatggcaag |
142 |
Q |
| |
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|||||||||||| || || |||| |||| |||||| ||| |||||| |||||||||| || ||||||||||| |
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| T |
43143611 |
acagccttgttcgatgggctttgacactagtggaagaacattctttctgtggggaggctgtatgatggcaag |
43143682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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