View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11357_low_3 (Length: 241)
Name: NF11357_low_3
Description: NF11357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11357_low_3 |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 32 - 224
Target Start/End: Complemental strand, 24391378 - 24391186
Alignment:
| Q |
32 |
caaaggcaatccatgagcacacaaatggttggctcattcaacaacacttcatgggaatctctagggggcaacaattgtgtgtatgtctctatccccaaat |
131 |
Q |
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| T |
24391378 |
caaaggcaatccatgagcacacaaatggttgactcattcaacaacacttcacgggaatctctagggggcaacaattgtgtgtatgtctctatccccaaat |
24391279 |
T |
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| Q |
132 |
caagtgagatgatcgcataatgctcaaacatcctattcttcgaatcatcatatataatatcatttcgaaagaccaaccaattaagagtgccgt |
224 |
Q |
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| T |
24391278 |
caagtgagatgatcgcataatgctcaaacatcctattcttcgaatcatcatatataatatcatttcgaaagaccaaccaattaagagtgccgt |
24391186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 24385165 - 24385052
Alignment:
| Q |
32 |
caaaggcaatccatgagcacacaaatggttggctcattcaacaacacttcatgggaatctctagggggcaacaattgtgtgtatgtctctatccccaaat |
131 |
Q |
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| T |
24385165 |
caaaggcaatccataagcacacaaagacttgtttcattcaacaacacttcatcagaaccttgagggggcaacaattgtgtgtatttctctgtccccaaat |
24385066 |
T |
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| Q |
132 |
caagtgagatgatc |
145 |
Q |
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| T |
24385065 |
taagtgagatgatc |
24385052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 14076599 - 14076542
Alignment:
| Q |
101 |
aacaattgtgtgtatgtctctatccccaaatcaagtgagatgatcgcataatgctcaa |
158 |
Q |
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| T |
14076599 |
aacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaattgctcaa |
14076542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 14386627 - 14386570
Alignment:
| Q |
101 |
aacaattgtgtgtatgtctctatccccaaatcaagtgagatgatcgcataatgctcaa |
158 |
Q |
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| T |
14386627 |
aacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaattgctcaa |
14386570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 70 - 219
Target Start/End: Original strand, 24950264 - 24950410
Alignment:
| Q |
70 |
caacaacacttcatgggaatctctagggggcaacaattgtgtgtatgtctctatccccaaatcaagtgagatgatcgcataatgctcaaacatcctattc |
169 |
Q |
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||||||| |||||| ||| ||| |||||||||||||||| ||||||||||| ||| | |||||||||||||||||||| ||| ||||| | ||| |
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| T |
24950264 |
caacaacccttcattagaacctcgagggggcaacaattgtctgtatgtctctgtcctcgaatcaagtgagatgatcgcaaaattctcaacagtatgatta |
24950363 |
T |
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| Q |
170 |
ttcgaatcatcatatataatatcatttcgaaagaccaaccaattaagagt |
219 |
Q |
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| T |
24950364 |
ttcca---atcatatgtaatatcatttcgaatgaccaaccaattaagagt |
24950410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 6921509 - 6921556
Alignment:
| Q |
94 |
agggggcaacaattgtgtgtatgtctctatccccaaatcaagtgagat |
141 |
Q |
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|||| ||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
6921509 |
agggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagat |
6921556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 6943113 - 6943160
Alignment:
| Q |
94 |
agggggcaacaattgtgtgtatgtctctatccccaaatcaagtgagat |
141 |
Q |
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|||| ||||||||| ||| ||||||||| ||||||||||||||||||| |
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| T |
6943113 |
agggagcaacaattttgtatatgtctctgtccccaaatcaagtgagat |
6943160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 16531 - 16582
Alignment:
| Q |
94 |
agggggcaacaattgtgtgtatgtctctatccccaaatcaagtgagatgatc |
145 |
Q |
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|||| |||||| ||||||||||||||| ||||||||||| || ||||||||| |
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| T |
16531 |
agggagcaacatttgtgtgtatgtctccatccccaaatcgagggagatgatc |
16582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 20712692 - 20712743
Alignment:
| Q |
94 |
agggggcaacaattgtgtgtatgtctctatccccaaatcaagtgagatgatc |
145 |
Q |
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| T |
20712692 |
agggagcaacatttgtgtgtatgtctccatccccaaatcgagggagatgatc |
20712743 |
T |
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