View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11357_low_4 (Length: 235)

Name: NF11357_low_4
Description: NF11357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11357_low_4
NF11357_low_4
[»] chr6 (9 HSPs)
chr6 (1-222)||(7012824-7013045)
chr6 (1-215)||(7025767-7025981)
chr6 (8-196)||(7029843-7030031)
chr6 (5-214)||(9170829-9171023)
chr6 (87-214)||(9159472-9159599)
chr6 (85-188)||(7041534-7041637)
chr6 (110-189)||(7046876-7046955)
chr6 (6-59)||(212983-213036)
chr6 (5-66)||(9159405-9159466)
[»] chr1 (7 HSPs)
chr1 (116-192)||(235247-235323)
chr1 (102-192)||(246901-246991)
chr1 (116-190)||(8814368-8814442)
chr1 (10-59)||(235374-235423)
chr1 (116-190)||(251400-251474)
chr1 (102-190)||(231617-231705)
chr1 (1-56)||(8814256-8814311)
[»] chr5 (4 HSPs)
chr5 (97-172)||(18571165-18571240)
chr5 (98-185)||(33541693-33541780)
chr5 (10-63)||(33541806-33541859)
chr5 (5-63)||(18571265-18571323)
[»] chr3 (22 HSPs)
chr3 (110-189)||(9343882-9343961)
chr3 (110-189)||(9448351-9448430)
chr3 (106-157)||(9613913-9613964)
chr3 (102-187)||(9395298-9395383)
chr3 (102-189)||(9695608-9695695)
chr3 (99-189)||(9329873-9329963)
chr3 (99-189)||(9336577-9336667)
chr3 (128-189)||(41985665-41985726)
chr3 (109-157)||(9348095-9348143)
chr3 (118-182)||(9352945-9353009)
chr3 (101-189)||(9485960-9486048)
chr3 (128-188)||(9655375-9655435)
chr3 (128-183)||(9617481-9617536)
chr3 (110-189)||(41980891-41980970)
chr3 (1-59)||(9494726-9494784)
chr3 (123-189)||(9494821-9494887)
chr3 (128-182)||(9646382-9646436)
chr3 (128-157)||(9340740-9340769)
chr3 (128-157)||(9348056-9348085)
chr3 (128-157)||(9369710-9369739)
chr3 (109-157)||(9340779-9340827)
chr3 (109-157)||(9369749-9369797)
[»] chr7 (1 HSPs)
chr7 (109-185)||(450110-450186)
[»] chr2 (1 HSPs)
chr2 (95-189)||(20694286-20694380)


Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 7013045 - 7012824
Alignment:
Q  1 ggggacatgaaattcttagtggagagcgaggaggatttgttgttagcagatgtttatgattgtctttgtactgatcttttagatcctgatcttaaagatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7013045 ggggacatgaaattcttagtggagagcgaggaggatttgttgttagcagatgtttatgattgtctttgtactgatcttttagatcctgatcttaaagatc 7012946  T
Q  101 ctgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggttggggttggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7012945 ctgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggttggggttggt 7012846  T
Q  201 atgttcgttttctgcctatgct 222  Q
    ||||||||||||||||| ||||    
T  7012845 atgttcgttttctgcctgtgct 7012824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 7025981 - 7025767
Alignment:
Q  1 ggggacatgaaattcttagtggagagcgaggaggatttgttgttagcagatgtttatgattgtctttgtactgatcttttagatcctgatcttaaagatc 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||| |||||||||||   |||| |||| ||| |||     
T  7025981 ggggacatgaaattcttagtggagagcgagggggatttgttgttagcggatgtttataattgtctttttactgatctttgtaatcccgatcataatgatt 7025882  T
Q  101 ctgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggttggggttggt 200  Q
     |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  7025881 gtgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttggggttggggttggt 7025782  T
Q  201 atgttcgttttctgc 215  Q
    |||||||||||||||    
T  7025781 atgttcgttttctgc 7025767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 7030031 - 7029843
Alignment:
Q  8 tgaaattcttagtggagagcgaggaggatttgttgttagcagatgtttatgattgtctttgtactgatcttttagatcctgatcttaaagatcctgtaag 107  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||   |||   ||| ||| |||| ||||||    
T  7030031 tgaaattcttagtggagagcgagggggatttgttgttagcggatgtttatgattgtctttttactgatctttataatctcaatcataatgatcgtgtaag 7029932  T
Q  108 aattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggttggggt 196  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| |||||||||||||||||||||    
T  7029931 gattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttggggttggggt 7029843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 5 - 214
Target Start/End: Complemental strand, 9171023 - 9170829
Alignment:
Q  5 acatgaaattcttagtggagagcgaggaggatttgttgttagcagatgtttatgattgtctttgtactgatcttttagatcctgatcttaaagatcctgt 104  Q
    |||||||||||||||||||||||||||  |||||||||||||| || ||||||||||||||||||| |||||||               || ||||||||    
T  9171023 acatgaaattcttagtggagagcgagggagatttgttgttagcggacgtttatgattgtctttgtattgatctt---------------aatgatcctgt 9170939  T
Q  105 aagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggttggggttggtatgt 204  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| || || |||||||| |||||| ||||||||||||||||||||||||||| |    
T  9170938 aaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggttggtatat 9170839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 9159472 - 9159599
Alignment:
Q  87 tgatcttaaagatcctgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttg 186  Q
    ||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || || |||||||| |||||| |||||||||||    
T  9159472 tgatcttaatgatcctgtaaggattgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttg 9159571  T
Q  187 gggttggggttggtatgttcgttttctg 214  Q
    |||||||||||||||| |||||||||||    
T  9159572 gggttggggttggtatattcgttttctg 9159599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 85 - 188
Target Start/End: Complemental strand, 7041637 - 7041534
Alignment:
Q  85 cctgatcttaaagatcctgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttct 184  Q
    ||||||||||| ||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||    
T  7041637 cctgatcttaacgattctgtatggattgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttct 7041538  T
Q  185 tggg 188  Q
    ||||    
T  7041537 tggg 7041534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 7046955 - 7046876
Alignment:
Q  110 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||   ||||||||||||||    
T  7046955 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttgggg 7046876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 212983 - 213036
Alignment:
Q  6 catgaaattcttagtggagagcgaggaggatttgttgttagcagatgtttatga 59  Q
    ||||||||||||||||||||||||||  ||||||||||||| ||||||||||||    
T  212983 catgaaattcttagtggagagcgagggtgatttgttgttagtagatgtttatga 213036  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 9159405 - 9159466
Alignment:
Q  5 acatgaaattcttagtggagagcgaggaggatttgttgttagcagatgtttatgattgtctt 66  Q
    |||| ||||||||||||||||||||||  |||||||||||| | || | |||||||||||||    
T  9159405 acataaaattcttagtggagagcgagggagatttgttgttatcggaggcttatgattgtctt 9159466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 235323 - 235247
Alignment:
Q  116 tgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggttg 192  Q
    |||||||||||||||| |||||||||||||||||||||||| ||| |||||| |||||  |||| ||||||||||||    
T  235323 tgtttaagcttaatgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttggggttg 235247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 246991 - 246901
Alignment:
Q  102 tgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggttg 192  Q
    |||||| ||||| ||||||||||||||||  | ||||||||| |||||||||||| | | |||||||||||   |||||||||||||||||    
T  246991 tgtaaggattgacttgtttaagcttaatgcaagggagaagaaatgggtgaagttggctaatttaggagatacagttttgttcttggggttg 246901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 8814368 - 8814442
Alignment:
Q  116 tgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggt 190  Q
    ||||||||||||| || |||||||||||||||||||||||| | | |||||| |||||  ||||||| |||||||    
T  8814368 tgtttaagcttaacgaaaaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttggggt 8814442  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 235423 - 235374
Alignment:
Q  10 aaattcttagtggagagcgaggaggatttgttgttagcagatgtttatga 59  Q
    |||||||||||||||||||| |  ||||||||||||||||||||||||||    
T  235423 aaattcttagtggagagcgacggtgatttgttgttagcagatgtttatga 235374  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 251400 - 251474
Alignment:
Q  116 tgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggt 190  Q
    |||||||||||||||| ||||| ||||||||||| |||||| | | | |||| |||||  |||||||||||||||    
T  251400 tgtttaagcttaatgaaaaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttggggt 251474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 231705 - 231617
Alignment:
Q  102 tgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggt 190  Q
    |||||| || ||| |||||||||| ||||  ||||||| |||||||||||||||| | | |||||| ||||   |||||||||||||||    
T  231705 tgtaaggatagatgtgtttaagctcaatgcaaaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttggggt 231617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 8814256 - 8814311
Alignment:
Q  1 ggggacatgaaattcttagtggagagcgaggaggatttgttgttagcagatgttta 56  Q
    ||||| || |||||| ||||||||||| |||  |||||||||||||||||||||||    
T  8814256 ggggatattaaattcctagtggagagcaagggtgatttgttgttagcagatgttta 8814311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 97 - 172
Target Start/End: Complemental strand, 18571240 - 18571165
Alignment:
Q  97 gatcctgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagata 172  Q
    ||||| ||||| |||||||| ||||||||| ||||||||||||||||||||||||| ||||| |||||||| ||||    
T  18571240 gatcccgtaaggattgatttctttaagcttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggata 18571165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 33541780 - 33541693
Alignment:
Q  98 atcctgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttctt 185  Q
    |||||||||| ||| ||||||||||||||||||||||||||| | ||||||||||||| |  |||||||||||||   ||||||||||    
T  33541780 atcctgtaaggattcatttgtttaagcttaatgagaaggagacggagtgggtgaagttaaagagtttaggagatattgttttgttctt 33541693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 33541859 - 33541806
Alignment:
Q  10 aaattcttagtggagagcgaggaggatttgttgttagcagatgtttatgattgt 63  Q
    |||||||||||||||||| |||  |||||||||||||  |||||||||||||||    
T  33541859 aaattcttagtggagagcaagggtgatttgttgttagtggatgtttatgattgt 33541806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 18571323 - 18571265
Alignment:
Q  5 acatgaaattcttagtggagagcgaggaggatttgttgttagcagatgtttatgattgt 63  Q
    ||||||||||||| |||||||||||||  ||| |||||||||| || |||||||| |||    
T  18571323 acatgaaattcttggtggagagcgagggcgatctgttgttagctgacgtttatgagtgt 18571265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 9343961 - 9343882
Alignment:
Q  110 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 189  Q
    ||||| ||||||||||| |||||| ||||||||||||||||||||| |||| |||||| |||||  ||||||||||||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttgggg 9343882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 9448430 - 9448351
Alignment:
Q  110 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 189  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||||| |||| |||||| |||||  ||||||||||||||    
T  9448430 ttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttgggg 9448351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 9613913 - 9613964
Alignment:
Q  106 agaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttga 157  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  9613913 agaattgatttttttaagcttgatgagaaggagaagaagtgggtgaagttga 9613964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 9395383 - 9395298
Alignment:
Q  102 tgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgg 187  Q
    |||||| |||||| |||||| |||| |||||||| |||| ||||||||||||||||| | ||||||||||  | ||||||||||||    
T  9395383 tgtaaggattgatgtgtttaggcttgatgagaagcagaaaaagtgggtgaagttgactaatttaggagatttggttttgttcttgg 9395298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 189
Target Start/End: Original strand, 9695608 - 9695695
Alignment:
Q  102 tgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 189  Q
    |||||| |||||| | || | |||| |||||||||||||||||||||| |||||||| | |||||| |||||| ||||||| ||||||    
T  9695608 tgtaagtattgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggg 9695695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 9329963 - 9329873
Alignment:
Q  99 tcctgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 189  Q
    ||||||| | |||||| |||||| |||| ||||||| ||||| | |||||| |||||| | | ||||||||||| | ||||||||||||||    
T  9329963 tcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttgggg 9329873  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 9336667 - 9336577
Alignment:
Q  99 tcctgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 189  Q
    ||||||| | |||||| |||||| |||| ||||||| ||||| | |||||| ||| |||| | ||||||||||| | ||||||||||||||    
T  9336667 tcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 9336577  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 41985726 - 41985665
Alignment:
Q  128 atgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 189  Q
    |||||||||||||||| ||||| |||||| | |||||||| |||||  ||||||||||||||    
T  41985726 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 41985665  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 9348143 - 9348095
Alignment:
Q  109 attgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttga 157  Q
    |||||||| ||||| ||| |||||||||||||||||||||||| |||||    
T  9348143 attgatttttttaaacttgatgagaaggagaagaagtgggtgaggttga 9348095  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 9353009 - 9352945
Alignment:
Q  118 tttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgtt 182  Q
    ||||||||| |||||| ||||||||||||||||||||||| ||  ||||| | |||| |||||||    
T  9353009 tttaagcttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtt 9352945  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 9485960 - 9486048
Alignment:
Q  101 ctgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 189  Q
    |||| ||| ||||| |||||| |||| ||||||||||||||||||||||| || ||| || ||| || |||| | ||||||| ||||||    
T  9485960 ctgtgagatttgatgtgtttaggcttgatgagaaggagaagaagtgggtggaggtgagaaatttgggggatatggttttgtttttgggg 9486048  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 9655375 - 9655435
Alignment:
Q  128 atgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggg 188  Q
    |||||||||||||||| |||||||||||||  | |||||| |||||| ||||||| |||||    
T  9655375 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttggg 9655435  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 9617481 - 9617536
Alignment:
Q  128 atgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttc 183  Q
    ||||||| |||||||| ||||||||||||| || |||||| |||||| ||||||||    
T  9617481 atgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttc 9617536  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 41980970 - 41980891
Alignment:
Q  110 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 189  Q
    ||||| |||||| ||||  | |||| |||||||| ||||| |||||||| |||||||| |||||  ||||||||||||||    
T  41980970 ttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttgggg 41980891  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 9494726 - 9494784
Alignment:
Q  1 ggggacatgaaattcttagtggagagcgaggaggatttgttgttagcagatgtttatga 59  Q
    |||||||| ||||||||||| ||||| || |  ||||||||||||| ||||||||||||    
T  9494726 ggggacatcaaattcttagtcgagagtgacggtgatttgttgttagtagatgtttatga 9494784  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 9494821 - 9494887
Alignment:
Q  123 gcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 189  Q
    |||| |||||||||||| ||  |||||||| ||||  |||||||| |||||| ||||||||||||||    
T  9494821 gcttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttgggg 9494887  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 9646382 - 9646436
Alignment:
Q  128 atgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgtt 182  Q
    |||||||||||||||| |||||||||||||  | |||||| |||||| |||||||    
T  9646382 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtt 9646436  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 157
Target Start/End: Complemental strand, 9340769 - 9340740
Alignment:
Q  128 atgagaaggagaagaagtgggtgaagttga 157  Q
    ||||||||||||||||||||||||||||||    
T  9340769 atgagaaggagaagaagtgggtgaagttga 9340740  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 157
Target Start/End: Complemental strand, 9348085 - 9348056
Alignment:
Q  128 atgagaaggagaagaagtgggtgaagttga 157  Q
    ||||||||||||||||||||||||||||||    
T  9348085 atgagaaggagaagaagtgggtgaagttga 9348056  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 157
Target Start/End: Complemental strand, 9369739 - 9369710
Alignment:
Q  128 atgagaaggagaagaagtgggtgaagttga 157  Q
    ||||||||||||||||||||||||||||||    
T  9369739 atgagaaggagaagaagtgggtgaagttga 9369710  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 9340827 - 9340779
Alignment:
Q  109 attgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttga 157  Q
    |||||||| ||| ||||| |||||||| ||||||||||||||| |||||    
T  9340827 attgatttttttgagcttgatgagaagaagaagaagtgggtgaggttga 9340779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 9369797 - 9369749
Alignment:
Q  109 attgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttga 157  Q
    |||||||| ||||| ||| |||||||||||||||||||| ||| |||||    
T  9369797 attgatttttttaaacttgatgagaaggagaagaagtggatgaggttga 9369749  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 450110 - 450186
Alignment:
Q  109 attgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttctt 185  Q
    |||||| |||||| |||| ||||||||||||| |||||||| |||||||  | |||||||||||  |||||||||||    
T  450110 attgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttctt 450186  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 189
Target Start/End: Original strand, 20694286 - 20694380
Alignment:
Q  95 aagatcctgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 189  Q
    ||||| || |||||||| || |||| | |||| |||| ||||||||||| |||||||  ||||||||||| || |||||| ||||||| ||||||    
T  20694286 aagatgctttaagaatttatgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttgggg 20694380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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