View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11358_high_10 (Length: 320)
Name: NF11358_high_10
Description: NF11358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11358_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 27 - 288
Target Start/End: Complemental strand, 42639429 - 42639168
Alignment:
| Q |
27 |
tgtgatattaatgttgtgcagatttttgctatactgaagagattgatggtccatcaaaggactactgtgatgaaggcaacacagagtggccatgtgcccc |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42639429 |
tgtgatattaatgttgtgcagatttttgctatactgaagagattgatggtccatcaaaggactactgtgatgaaggcaacacagagtggccatgtgcccc |
42639330 |
T |
|
| Q |
127 |
taacaaaggttactatggtcgtggaccgattcaactttcttggaactacaactatggaccagctggaagagacaatggttttgatggattgaactcacct |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42639329 |
taacaaaggttactatggtcgtggaccgattcaactatcttggaactacaactatggaccagctggaagagacaatggttttgatggattgaactcacct |
42639230 |
T |
|
| Q |
227 |
gaaacagtggccaatgatcctacagtgtccttcaagacagcattatggtattggatgaataa |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42639229 |
gaaacagtggccaatgatcctacagtgtccttcaagacagcattatggtattggatgaataa |
42639168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 43 - 286
Target Start/End: Complemental strand, 42634336 - 42634093
Alignment:
| Q |
43 |
tgcagatttttgctatactgaagagattgatggtccatcaaaggactactgtgatgaaggcaacacagagtggccatgtgcccctaacaaaggttactat |
142 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| |||||||||||||||| |||||| |||||||||||| || ||||||||||||||||| |||||| |
|
|
| T |
42634336 |
tgcagatttttgctatatagaagagaaggatggtgcatcaaaggactactgcgatgaaagcaacacagagtacccgtgtgcccctaacaaaggatactat |
42634237 |
T |
|
| Q |
143 |
ggtcgtggaccgattcaactttcttggaactacaactatggaccagctggaagagacaatggttttgatggattgaactcacctgaaacagtggccaatg |
242 |
Q |
| |
|
|| ||||||||||||||| | |||||||||| || || ||||||||||||| |||| ||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
42634236 |
ggccgtggaccgattcaattatcttggaactttaattacggaccagctggaaaggacagtggttttgatgaattgaactctcctgaaacagtggccaatg |
42634137 |
T |
|
| Q |
243 |
atcctacagtgtccttcaagacagcattatggtattggatgaat |
286 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42634136 |
atcctttagtgtccttcaagacagcattatggtattggatgaat |
42634093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 42628785 - 42628651
Alignment:
| Q |
27 |
tgtgatattaatgttg-tgcagatttttgctatactgaagagattgatggtccatcaaaggactactgtgatgaaggcaacacagagtggccatgtgccc |
125 |
Q |
| |
|
||||| |||||||||| ||||||||| |||||||||||||||||||||||| ||||| | ||||||||||||||| |||| |||||| ||||||||| |
|
|
| T |
42628785 |
tgtgaaattaatgttgatgcagatttctgctatactgaagagattgatggtgcatcataagactactgtgatgaaagcaatgcagagtacacatgtgccc |
42628686 |
T |
|
| Q |
126 |
ctaacaaaggttactatggtcgtggaccgattcaa |
160 |
Q |
| |
|
|||||||||| | ||||||| |||||||||||||| |
|
|
| T |
42628685 |
ctaacaaagggttctatggttgtggaccgattcaa |
42628651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 42628638 - 42628588
Alignment:
| Q |
197 |
gacaatggttttgatggattgaactcacctgaaacagtggccaatgatcct |
247 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42628638 |
gacaatggttctgatggattgaactctcctgaaacagtggccaatgatcct |
42628588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University