View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11358_high_11 (Length: 319)
Name: NF11358_high_11
Description: NF11358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11358_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 39933590 - 39933383
Alignment:
| Q |
25 |
tcaaaagtaaattttacaactgtttcaattcaattgatcagaatagtgaagtgttggtaacaacagaaactatacataaacgatgaacaatactcattcg |
124 |
Q |
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| T |
39933590 |
tcaaaagtaaattttacaactgtttcaattcaattgatcagaatagtgaagtgttggtaacaacagaaactatacataaaagatgaacaatactcattcg |
39933491 |
T |
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| Q |
125 |
caatattcgatcaaatcaaacaccatgaacaacaataacaacaacaaacccaaacctcctttcatgccagcaaaggatgacaccaaacctgttcttcaag |
224 |
Q |
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| T |
39933490 |
caatattcgatcaaatcaaacaccatgaacaacaataacaacaacaaacccaaacctcctttcatgccagcaaaggatgacaccaaacctgttcttcaag |
39933391 |
T |
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| Q |
225 |
acccagta |
232 |
Q |
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|||||||| |
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| T |
39933390 |
acccagta |
39933383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 3228944 - 3229010
Alignment:
| Q |
161 |
aacaacaacaaacccaaacctcctttcatgccagcaaaggatgacaccaaacctgttcttcaagacc |
227 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3228944 |
aacaataacaaacccaaacctgctttcatgccagcaaaggatgataccaaacctgttcttcaagacc |
3229010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 3228059 - 3228106
Alignment:
| Q |
183 |
ctttcatgccagcaaaggatgacaccaaacctgttcttcaagacccagt |
231 |
Q |
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| T |
3228059 |
ctttcataccagcaaaggatgataccaaacctgttctt-aagacccagt |
3228106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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