View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11358_high_12 (Length: 317)
Name: NF11358_high_12
Description: NF11358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11358_high_12 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 27710367 - 27710673
Alignment:
| Q |
11 |
aatgaagataaacatgtggatttgataggccttagcttcttattttcccttatttcaaaattcatacaattctgctgctaatcgtggctttgctgcaact |
110 |
Q |
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| T |
27710367 |
aatgaagataaacatgtggatttgataggccttagcttcttattttcccttacttcaaaattcatacaattctgctgctaatcgtggctttgctgcaact |
27710466 |
T |
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| Q |
111 |
gtcagtggctcatcaagagatataacgccattggaatcaaaatgattgattcttgatatattgggatgtgcactccaagtgaagccatggagtaatcttg |
210 |
Q |
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| T |
27710467 |
gtcagtggctcatcaagagatataacgccattggaatcaaaatgattgattcttgatatattgggatgtgcactccaagtgaagccatggagtaatcttg |
27710566 |
T |
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| Q |
211 |
ctaatagcattatggtcattgtagaaccaagcataacagcaggacaaccacgtcttcctgtactaaaggatataaatttcaattctggctctgtcaacgc |
310 |
Q |
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| T |
27710567 |
ctaatagcattatggtcattgtggaaccaagcataacagcaggacaaccacgtcttcctgtactaaaggatataaacttcaattctggctctgtcaacgc |
27710666 |
T |
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| Q |
311 |
tatagcc |
317 |
Q |
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||||||| |
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| T |
27710667 |
tatagcc |
27710673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 314
Target Start/End: Complemental strand, 27700088 - 27699785
Alignment:
| Q |
11 |
aatgaagataaacatgtggatttgataggccttagcttcttattttcccttatttcaaaattcatacaattctgctgctaatcgtggctttgctgcaact |
110 |
Q |
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| T |
27700088 |
aatgaagataaacatgtgaatttgttaagccttagaatcttattttcccatacttcaaaagccatacaattctgctgctaatcgtggctttgctacaacc |
27699989 |
T |
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| Q |
111 |
gtcagtggctcatcaagagatataacgccattggaatcaaaatgattgattcttgatatattgggatgtgcactccaagtgaagccatggagtaatcttg |
210 |
Q |
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| T |
27699988 |
gttaatggctcatcaagaaccataacaccgttggactcaacaaactttattcttgttgtattgggaggtaaacaccaagtgaagccatgaagtaacctag |
27699889 |
T |
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| Q |
211 |
ctaatagcattatggtcattgtagaaccaagcataacagcaggacaaccacgtcttcctgtactaaaggatataaatttcaattctggctctgtcaacgc |
310 |
Q |
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| T |
27699888 |
ctaatagcattatagtcattgtggagccaagcatgataccaggacaacctcgccttcctatactaaaggttatgaacttcaattctggctctgtcaaagc |
27699789 |
T |
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| Q |
311 |
tata |
314 |
Q |
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|||| |
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| T |
27699788 |
tata |
27699785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 307
Target Start/End: Complemental strand, 26411424 - 26411274
Alignment:
| Q |
157 |
tgattcttgatatattgggatgtgcactccaagtgaagccatggagtaatcttgctaatagcattatggtcattgtagaaccaagcataacagcaggaca |
256 |
Q |
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|||| |||||| || ||||| || ||||||||||||||||||||| || || || ||||| | | |||||||| | |||||| | ||| ||||||| |
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| T |
26411424 |
tgatgcttgatgtagtgggaggtatactccaagtgaagccatggagcaacctagccaatagtaaaacagtcattgtggtgccaagcttgacaccaggaca |
26411325 |
T |
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| Q |
257 |
accacgtcttcctgtactaaaggatataaatttcaattctggctctgtcaa |
307 |
Q |
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|| ||| |||| || ||||||||||| || ||||| ||||||||||||| |
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| T |
26411324 |
actacgcattccagtgctaaaggatatgaacttcaaacctggctctgtcaa |
26411274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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