View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11358_high_14 (Length: 307)

Name: NF11358_high_14
Description: NF11358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11358_high_14
NF11358_high_14
[»] scaffold0428 (3 HSPs)
scaffold0428 (14-293)||(2315-2594)
scaffold0428 (68-293)||(15059-15278)
scaffold0428 (67-193)||(13771-13896)
[»] chr6 (11 HSPs)
chr6 (14-293)||(33258194-33258473)
chr6 (14-288)||(33414568-33414840)
chr6 (38-236)||(31564920-31565117)
chr6 (14-211)||(33269541-33269740)
chr6 (144-293)||(33293102-33293251)
chr6 (37-288)||(33395074-33395326)
chr6 (35-134)||(33384049-33384148)
chr6 (68-293)||(33278975-33279194)
chr6 (190-282)||(28872999-28873091)
chr6 (54-193)||(33406911-33407049)
chr6 (67-193)||(33280357-33280482)
[»] chr2 (1 HSPs)
chr2 (35-293)||(17447703-17447961)


Alignment Details
Target: scaffold0428 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 293
Target Start/End: Original strand, 2315 - 2594
Alignment:
Q  14 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2315 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 2414  T
Q  114 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2415 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga 2514  T
Q  214 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2515 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtt 2594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 68 - 293
Target Start/End: Complemental strand, 15278 - 15059
Alignment:
Q  68 aatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttct 167  Q
    ||||||| |||||||||| ||||||||||||||| ||| ||||||||||||||||  |||||||||||| || || |||||||| ||||||||||    |    
T  15278 aatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatg-tatgtaccaattcttcctt----t 15184  T
Q  168 gctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttct 267  Q
      |||  | ||||||||||| ||||| ||| |||||||||||||  | || |||||||||| ||||||| ||| |||||| ||||||||| | || || |    
T  15183 agtagcttgccggatttcttgtcagctgataagagacccttttt-ctaaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcattat 15085  T
Q  268 tacagtccatcatccctgcacaggtt 293  Q
    ||||||||||| |||| |||| ||||    
T  15084 tacagtccatcgtcccagcaccggtt 15059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 193
Target Start/End: Complemental strand, 13896 - 13771
Alignment:
Q  67 aaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttc 166  Q
    |||||||||||||||||||| |||||| || |||| ||| ||||||| ||||| ||||||| |||||||| || || || |||| ||||| ||||||  |    
T  13896 aaatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatg-taggtactgattcctccttcagc 13798  T
Q  167 tgctagtctcccggatttcttatcagc 193  Q
    |  || ||| ||||||||||| |||||    
T  13797 ttttaatcttccggatttcttgtcagc 13771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 293
Target Start/End: Original strand, 33258194 - 33258473
Alignment:
Q  14 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258194 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 33258293  T
Q  114 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258294 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga 33258393  T
Q  214 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33258394 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtt 33258473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 14 - 288
Target Start/End: Original strand, 33414568 - 33414840
Alignment:
Q  14 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 113  Q
    |||||||||||| ||  ||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||    
T  33414568 gaacctgtggac-aagcagcaacttgcattgcaagatcatcaaccaactccttgaatttctcacttctgccaacaaagtccgtttcacagttcacttcaa 33414666  T
Q  114 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga 213  Q
    |||||||||||||  ||| |||| || || ||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||      
T  33414667 ttagaacaccaatacgtgcatcgtgaatg-tatgtaccgattcttccttcagctgctagtcttccggatttcttatcagcggatgagagaccctttttcc 33414765  T
Q  214 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcac 288  Q
    ||||||||||||||| |||||||||||| ||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  33414766 tgagatatgcttgcgccttttcaagatcgccttccgtttcagcaagagctttcttacagtccatcatccctgcac 33414840  T

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Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 38 - 236
Target Start/End: Complemental strand, 31565117 - 31564920
Alignment:
Q  38 tgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgc 137  Q
    |||||||||||||| | |||||||||||| |||||||||||||| || | |||||| |||||||  ||||||||||||||||||| |||| ||||||||     
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  138 gagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttca 236  Q
    || || ||||||||||||||||||||  |  || |||| ||||||||||| |||||||||||||||||||||||  |||| |||||||||| |||||||    
T  31565017 gaatg-tatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 31564920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 33269541 - 33269740
Alignment:
Q  14 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 113  Q
    |||||||||||| ||  ||| ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  33269541 gaacctgtggac-aagcagcaacttgcattgcaagatcatcaaccaacttcttgaatttctcacttctgccaacaaagtcggtttcacagttcacttcaa 33269639  T
Q  114 ttagaacaccaatgtgtgaatcgcgagtg---atatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttt 210  Q
    |||||||||| |||  || || | || ||   |||||||||||||||| ||||  ||||||||||  | || ||||||||||||||||||||||||||||    
T  33269640 ttagaacaccgatgcatgcattgtgaatgtatatatgtaccgattctttcttcagctgctagtcttgcagacttcttatcagcggatgagagaccctttt 33269739  T

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Target: chr6; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 144 - 293
Target Start/End: Original strand, 33293102 - 33293251
Alignment:
Q  144 tatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcac 243  Q
    |||||||| |||||||||||  |||||||||| | |||||||||||||||| ||||||||||||||||  |||| ||||||| |  ||||||||||||||    
T  33293102 tatgtaccaattcttccttcagctgctagtcttctggatttcttatcagcgaatgagagacccttttttctgaggtatgctttcaccttttcaagatcac 33293201  T
Q  244 cttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt 293  Q
    |||||||||| ||| ||||||||||||||||||||||||| |||| ||||    
T  33293202 cttctgtttcagcatgagctttcttacagtccatcatcccagcaccggtt 33293251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 37 - 288
Target Start/End: Original strand, 33395074 - 33395326
Alignment:
Q  37 ttgcattgcaagatcgtcaaccaactccttaaatttctcacttctg--ccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat 134  Q
    |||||||| ||||||  ||||||||||||| ||| | |||||||||  ||||||||||||||||||| |||||||||||| ||||||   ||| ||| ||    
T  33395074 ttgcattgaaagatcagcaaccaactccttgaatctatcacttctgtgccaacaaagtcggtttcacagttcacttcaatcagaacatagatgcgtgcat 33395173  T
Q  135 cgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggctttt 234  Q
    ||  | || ||| ||||||||||||||||  ||||||| || ||||||||||| ||||| ||||||||||||||| |  | || |||| ||| | |||||    
T  33395174 cgtcaatg-tatttaccgattcttccttcagctgctagcctaccggatttcttgtcagctgatgagagaccctttgttctaaggtatgattgggcctttt 33395272  T
Q  235 caagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcac 288  Q
    ||||||||||||  ||||||||    ||||||||||||||||| ||||| ||||    
T  33395273 caagatcacctttagtttcggctaaggctttcttacagtccataatcccagcac 33395326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 35 - 134
Target Start/End: Original strand, 33384049 - 33384148
Alignment:
Q  35 acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat 134  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| || ||||||||||||||||||||| ||||||||||    
T  33384049 acttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccgatgtgtgaat 33384148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 68 - 293
Target Start/End: Original strand, 33278975 - 33279194
Alignment:
Q  68 aatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttct 167  Q
    ||||||| |||||||||| ||||||||||||||| ||| ||||||||||||||||  |||||||||||| || || |||||||| ||||||||||    |    
T  33278975 aatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatg-tatgtaccaattcttcctt----t 33279069  T
Q  168 gctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttct 267  Q
      |||  | ||||||||||| ||||| ||| |||||||||||||  | || |||||||||| ||||||| ||| |||||| ||||||||| | || || |    
T  33279070 agtagcttgccggatttcttgtcagctgataagagacccttttt-ctaaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcattat 33279168  T
Q  268 tacagtccatcatccctgcacaggtt 293  Q
    ||||||||||| |||| |||| ||||    
T  33279169 tacagtccatcgtcccagcaccggtt 33279194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 190 - 282
Target Start/End: Complemental strand, 28873091 - 28872999
Alignment:
Q  190 cagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatcc 282  Q
    |||| ||||||||||||||||   |||| ||||||| || |||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  28873091 cagcagatgagagacccttttatctgaggtatgcttacgccttttcaagatcaccttctgtttcggcaagggctttcttacagtccatcatcc 28872999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 33406911 - 33407049
Alignment:
Q  54 caaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccga 153  Q
    ||||||||||||  |||| ||||||||||||||||||||||||||||  ||||||| |||||| ||||| ||||  | ||| |  | | ||||||||||     
T  33406911 caaccaactcctcgaattgctcacttctgccaacaaagtcggtttcatagttcactacaattataacactaatgcataaattgtcaat-atatgtaccgg 33407009  T
Q  154 ttcttccttcttctgctagtctcccggatttcttatcagc 193  Q
    || |||| ||  |||||||||| | |||||||||||||||    
T  33407010 tttttccatcggctgctagtcttctggatttcttatcagc 33407049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 193
Target Start/End: Original strand, 33280357 - 33280482
Alignment:
Q  67 aaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttc 166  Q
    |||||||||||||||||||| |||||| || |||| ||| ||||||| ||||| ||||||| |||||||| || || || |||| ||||| ||||||  |    
T  33280357 aaatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatg-taggtactgattcctccttcagc 33280455  T
Q  167 tgctagtctcccggatttcttatcagc 193  Q
    |  || ||| ||||||||||| |||||    
T  33280456 ttttaatcttccggatttcttgtcagc 33280482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 35 - 293
Target Start/End: Complemental strand, 17447961 - 17447703
Alignment:
Q  35 acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat 134  Q
    ||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||||  ||||| |||||||||| |||| ||| ||| ||    
T  17447961 acttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaattagaccaccgatgcgtgcat 17447862  T
Q  135 cgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagaga-ccctttttgatgagatatgcttgcggcttt 233  Q
    || || || ||||||||||||||||||||  |||| ||||| ||||||||||||||||||||||||||| ||||||||  |||| |||||||||| ||||    
T  17447861 cgtgaatg-tatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccccttttttctgaggtatgcttgcgccttt 17447763  T
Q  234 tcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt 293  Q
    |||||||||||||| ||||||||| | ||||||||||||||||| ||||| |||| ||||    
T  17447762 tcaagatcaccttcagtttcggcaagggctttcttacagtccataatcccagcaccggtt 17447703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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