View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11358_high_1_N (Length: 850)
Name: NF11358_high_1_N
Description: NF11358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11358_high_1_N |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 78 - 490
Target Start/End: Original strand, 23385778 - 23386193
Alignment:
| Q |
78 |
acattgcatgaggtaagacatgaacatttgcttataagtggagatagtctcagccttataaaccagttttctaaagatattaagttaagtcctactcaaa |
177 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
23385778 |
acattgtatgaggtaagacatgaacatttgcttataagtggagagagtctcaaccttacaaaccagttttctaaagatattgagttaagtcctactcaaa |
23385877 |
T |
|
| Q |
178 |
ttctaaaatgtttttatcaatgtctaatcaatttgacgaatcatagttttaatacataaacatattgaatacttgtaataagatgatatatat---gagt |
274 |
Q |
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||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23385878 |
ttctaaaatatttttatcaatgtctaatcaatttaacgaatcatagttttaatacataaacatattgaatacttgtaataagatgatatatataatgagt |
23385977 |
T |
|
| Q |
275 |
ttgaactatggtatagctattgaactgcaaaatttggtaaggtcatacaaggtcaatacaaaataatttgaagaaaattgcggtcaaatgcaaatatagt |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23385978 |
ttgaactatggtatagctattgaactgcaaaatttggtaaggtcatacaaggtcaatacaaaataatttgaagaaaattgcggtcaaatgcaaatatagt |
23386077 |
T |
|
| Q |
375 |
ataacattaatctggattatgtttcgatagtattatgtttcaaataacatatcaaagattgaacatgtgagacttgttgatcaatcctcaattgattcaa |
474 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23386078 |
ataacattaatctggattatatttcgatagtattatgtttcaaataacatatcaaagattgaacatgtgagacttgttgatcaatcctcaattgattcaa |
23386177 |
T |
|
| Q |
475 |
ccatgtttgaagtgga |
490 |
Q |
| |
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| T |
23386178 |
ccatgtttgaagtgga |
23386193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 543 - 801
Target Start/End: Original strand, 23386246 - 23386505
Alignment:
| Q |
543 |
cgagcttgattctattctatatctcaattcaatccttttcaatgagaataaaatacaatcaaaataaaaccaatcaataaactaattaattttcagttaa |
642 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
23386246 |
cgagcttgattctattctatatctcaattcaatcctgcccaatgagaataaaatacaatcaaaataaaaccaatcattaaactaattaatttttagttaa |
23386345 |
T |
|
| Q |
643 |
atgaatagaacaccaatcggttcggtctgatttttaaaacactaatcccaaaaacatcaaagattttggcatcactgtccatatcatagttgtggacc-t |
741 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
23386346 |
atgaatagaacaccgatcggttcggtctgatttttaaaacattagtcccaaaaacatcaaagattttagcatcactgtccatatcatagttgtggacctt |
23386445 |
T |
|
| Q |
742 |
tttttctaaattgtgtttcttagtggaaaagaagtggacttctaattttgtaaaggtggg |
801 |
Q |
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|
| T |
23386446 |
tttttctaaattgtgtttattagtggaaaagaagtggacttctaattttgtaaaggtggg |
23386505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 6e-24; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 39577595 - 39577652
Alignment:
| Q |
29 |
gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcat |
86 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39577595 |
gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcat |
39577652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 39592072 - 39592125
Alignment:
| Q |
29 |
gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacatt |
82 |
Q |
| |
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|||||||||||||| || ||||| |||||||||||||| ||||||||||||||| |
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| T |
39592072 |
gttttacctgtcgttacacgttttctttgtcctccagaaatacctcttaacatt |
39592125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 39541732 - 39541788
Alignment:
| Q |
30 |
ttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcat |
86 |
Q |
| |
|
|||||||||| ||||| |||||| ||||||| ||||||||||||| ||||||||||| |
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|
| T |
39541732 |
ttttacctgttgtaacgcgtttcttttgtccaccagagatacctcgtaacattgcat |
39541788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 39334828 - 39334771
Alignment:
| Q |
29 |
gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcat |
86 |
Q |
| |
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||||||||||| |||| |||||| ||||||| |||||||||||||||| |||||||| |
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| T |
39334828 |
gttttacctgttgtaaggcgtttcttttgtccgccagagatacctcttatcattgcat |
39334771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 39346092 - 39346035
Alignment:
| Q |
29 |
gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcat |
86 |
Q |
| |
|
||||||||||| |||| |||||| ||||||| |||||||||||||||| |||||||| |
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| T |
39346092 |
gttttacctgttgtaaggcgtttcttttgtccgccagagatacctcttatcattgcat |
39346035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 39567779 - 39567836
Alignment:
| Q |
29 |
gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcat |
86 |
Q |
| |
|
||||||||||| |||| |||||| ||||||| ||||||||||||| ||||||||||| |
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| T |
39567779 |
gttttacctgttgtaaggcgtttcttttgtccaccagagatacctcgtaacattgcat |
39567836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 39550989 - 39551045
Alignment:
| Q |
30 |
ttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcat |
86 |
Q |
| |
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||||||| || ||||| |||||| ||||||| ||||||||||||| ||||||||||| |
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| T |
39550989 |
ttttaccagttgtaacgcgtttcttttgtccaccagagatacctcgtaacattgcat |
39551045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 39360637 - 39360579
Alignment:
| Q |
28 |
agttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcat |
86 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||| ||||||||| |||||| |||||||| |
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|
| T |
39360637 |
agttttacctgttgtaaggcgtttcttttgtccgccagagatagctcttatcattgcat |
39360579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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