View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11358_high_7 (Length: 346)

Name: NF11358_high_7
Description: NF11358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11358_high_7
NF11358_high_7
[»] chr3 (3 HSPs)
chr3 (29-279)||(5351915-5352164)
chr3 (29-156)||(5344897-5345024)
chr3 (106-150)||(5325075-5325119)
[»] chr7 (8 HSPs)
chr7 (270-326)||(39577595-39577651)
chr7 (273-326)||(39592072-39592125)
chr7 (270-325)||(39541732-39541787)
chr7 (270-326)||(39334772-39334828)
chr7 (270-326)||(39346036-39346092)
chr7 (270-326)||(39567779-39567835)
chr7 (270-325)||(39550989-39551044)
chr7 (270-327)||(39360580-39360637)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 29 - 279
Target Start/End: Original strand, 5351915 - 5352164
Alignment:
Q  29 tcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaagtcatttaccctt 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5351915 tcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttaccctt 5352014  T
Q  129 caacttcaaggcaaaaattgaaacaactttaagttccataaattgcttcaatcgtgatttttattcaattaataaaacgtatttgttctttatttacatt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||    
T  5352015 caacttcaaggcaaaaattgaaacaactttaagttccataaattgcttcaatcgtgatttttattcaattaaaaaaatgta-ttgttctttatttgcatt 5352113  T
Q  229 tagaattttatttgcattgttgccttgtcctgtgttttatttgcaatgtta 279  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  5352114 tagaattttatttgcattgttgccttgtcctgtgtttgatttacaatgtta 5352164  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 29 - 156
Target Start/End: Original strand, 5344897 - 5345024
Alignment:
Q  29 tcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaagtcatttaccctt 128  Q
    |||||||||||||||||||||  ||||||| |||||||||||| ||||||| |||||||  |||  || | |||| |||||||||||| ||||||| ||     
T  5344897 tcagcctccagcaaaatttaatagtgatggtgatttgattgatgaagatgctaagaataggttgttggcaattctgttgtccttgaaggcatttactctg 5344996  T
Q  129 caacttcaaggcaaaaattgaaacaact 156  Q
    ||||||||||||||||||||||||||||    
T  5344997 caacttcaaggcaaaaattgaaacaact 5345024  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 5325119 - 5325075
Alignment:
Q  106 tgtccttgaagtcatttacccttcaacttcaaggcaaaaattgaa 150  Q
    |||||||||||  |||||||||| |||||||||||| ||||||||    
T  5325119 tgtccttgaaggaatttacccttaaacttcaaggcagaaattgaa 5325075  T

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Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 39577651 - 39577595
Alignment:
Q  270 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39577651 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 39577595  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 39592125 - 39592072
Alignment:
Q  273 aatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 326  Q
    ||||||||||||||| |||||||||||||| ||||| || ||||||||||||||    
T  39592125 aatgttaagaggtatttctggaggacaaagaaaacgtgtaacgacaggtaaaac 39592072  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 325
Target Start/End: Complemental strand, 39541787 - 39541732
Alignment:
Q  270 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaa 325  Q
    |||||||||| ||||||||||||| ||||||| |||||| ||||| ||||||||||    
T  39541787 tgcaatgttacgaggtatctctggtggacaaaagaaacgcgttacaacaggtaaaa 39541732  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 39334772 - 39334828
Alignment:
Q  270 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 326  Q
    ||||||| |||||||||||||||| ||||||| ||||||  |||| |||||||||||    
T  39334772 tgcaatgataagaggtatctctggcggacaaaagaaacgccttacaacaggtaaaac 39334828  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 39346036 - 39346092
Alignment:
Q  270 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 326  Q
    ||||||| |||||||||||||||| ||||||| ||||||  |||| |||||||||||    
T  39346036 tgcaatgataagaggtatctctggcggacaaaagaaacgccttacaacaggtaaaac 39346092  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 39567835 - 39567779
Alignment:
Q  270 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 326  Q
    |||||||||| ||||||||||||| ||||||| ||||||  |||| |||||||||||    
T  39567835 tgcaatgttacgaggtatctctggtggacaaaagaaacgccttacaacaggtaaaac 39567779  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 325
Target Start/End: Complemental strand, 39551044 - 39550989
Alignment:
Q  270 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaa 325  Q
    |||||||||| ||||||||||||| ||||||| |||||| ||||| || |||||||    
T  39551044 tgcaatgttacgaggtatctctggtggacaaaagaaacgcgttacaactggtaaaa 39550989  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 327
Target Start/End: Original strand, 39360580 - 39360637
Alignment:
Q  270 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaact 327  Q
    ||||||| |||||| ||||||||| ||||||| ||||||  |||| ||||||||||||    
T  39360580 tgcaatgataagagctatctctggcggacaaaagaaacgccttacaacaggtaaaact 39360637  T

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