View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11358_high_9 (Length: 324)
Name: NF11358_high_9
Description: NF11358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11358_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 48043542 - 48043231
Alignment:
| Q |
1 |
agtttgttacatcatgatctcatgtaaaaactccaacaacattgactcagtaatttgtcggtttgtaaaacattctaaagcaaacaactgaagctctcaa |
100 |
Q |
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| T |
48043542 |
agtttgttacatcatgatctcatgtaaaaactccaacaacattgactcagtaatttgtcggtttgtaaaacattctaaagcaaacaactgaagctctcaa |
48043443 |
T |
|
| Q |
101 |
cttctgccatatgaatctatttgaatgttacattgcagactgatatcaaggtcatcgaagggatgatattggtgtatcatactactagtttctcttttcc |
200 |
Q |
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| T |
48043442 |
cttctgccatatgaatctatttgaatgttacattgcagactgatatcaaggtcattgaagggatgatattggtgtatcatactactagtttttcttttcc |
48043343 |
T |
|
| Q |
201 |
atatttgactggctttaaatccaatctgatagcctgtgataactaggtttaccaacaaaggtatcaaagagagtattatacttatttacctaccatacag |
300 |
Q |
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| T |
48043342 |
atatttgactggctttaaatccaatctgatagcttgtaataactaggtttaccaacaaaggtatcaaagagagtattatacttatttacctaccatacag |
48043243 |
T |
|
| Q |
301 |
gttcacaatatt |
312 |
Q |
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|||||||||||| |
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| T |
48043242 |
gttcacaatatt |
48043231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 48056760 - 48056587
Alignment:
| Q |
1 |
agtttgttacatcatgatctcatgtaaaaactccaacaacattgactcagtaatttgtcggtttgtaaaacattctaaagcaaacaactgaagctctcaa |
100 |
Q |
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| T |
48056760 |
agtttgttgcatcatgatctcaagtaaaaactccaccaacatcgactcagttatttgttggtttgtaaaacattctaacgcaaagaactgaagctctcaa |
48056661 |
T |
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| Q |
101 |
cttctgccatatgaatctatttgaatgttacattgcagactgatatcaaggtcatcgaagggatgatattggtg |
174 |
Q |
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| T |
48056660 |
cttctgccctaggattctatttgaatgttacattgcagactgatatcaaggtcattgaagggatgatattggtg |
48056587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 48051472 - 48051312
Alignment:
| Q |
1 |
agtttgttacatcatgatctcatgtaaaaactccaacaacattgactcagtaatttgtcggtttgtaaaacattctaaagcaaacaactgaagctctcaa |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||||||||||||||||||||| |||||||||||| |
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| T |
48051472 |
agtttgttacatcatgatctcgtgtaaaaactccaacaacatggactcagttat------------aaaacattctaaagcaaacaattgaagctctcaa |
48051385 |
T |
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| Q |
101 |
cttctgccatatgaatctatttgaatgttacattgcagactgatatcaaggtcatcgaagggatgatattggt |
173 |
Q |
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| T |
48051384 |
ctcttgccatatgaatcaatttgaatgttacattgcagactgatatcaaggtctttgaagagatgatgttggt |
48051312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 48037498 - 48037329
Alignment:
| Q |
1 |
agtttgttacatcatgatctcatgtaaaaactccaacaacatt----gactcagtaatttgtcggtttgtaaaacattctaaagcaaacaactgaagctc |
96 |
Q |
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|||||||| | ||||||||||||||||||||| || ||||||| |||||||| ||| || | |||||||| |||||||||||||| |||| |||||| |
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| T |
48037498 |
agtttgttgcttcatgatctcatgtaaaaacttcaccaacattaattgactcagttattagttgatttgtaaagcattctaaagcaaagaacttaagctc |
48037399 |
T |
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| Q |
97 |
tcaa-cttctgccatatgaatctatttgaatgttacattgcagactgatatcaaggtcatcgaagggatg |
165 |
Q |
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|||| |||||||| | |||||||||||||||||| ||||||||||||||||||| ||||| | ||||||| |
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| T |
48037398 |
tcaaacttctgccctgtgaatctatttgaatgttgcattgcagactgatatcaatgtcatggtagggatg |
48037329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 48045331 - 48045200
Alignment:
| Q |
18 |
tctcatgtaaaaactccaacaacattgactcagtaatttgtcggtttgtaaaacatt---ctaaagcaaacaactgaagctctcaacttctgccatatga |
114 |
Q |
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||||||||||||||| || |||||||| |||||| || || | ||||||||||||| |||||||||| |||| ||||||| ||||| ||||| |
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| T |
48045331 |
tctcatgtaaaaactacaccaacattggctcagttatgcgttgctttgtaaaacatttttctaaagcaaagaact------ctcaactcctgccctatga |
48045238 |
T |
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| Q |
115 |
atctatttgaatgttacattgcagactgatatcaaggt |
152 |
Q |
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| T |
48045237 |
atctatttgaatgttgcattgcagattgatatcaaggt |
48045200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 48051209 - 48051154
Alignment:
| Q |
235 |
tgtgataactaggtttaccaacaaaggtatcaaagagagtattatacttatttacc |
290 |
Q |
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| T |
48051209 |
tgtgatagcttggtttaccaacaaaggtatcaaagagagtattatacttatttacc |
48051154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 48056532 - 48056495
Alignment:
| Q |
237 |
tgataactaggtttaccaacaaaggtatcaaagagagt |
274 |
Q |
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| T |
48056532 |
tgataacttggtttaccatcaaaggtatcaaagagagt |
48056495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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