View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11358_low_1 (Length: 341)

Name: NF11358_low_1
Description: NF11358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11358_low_1
NF11358_low_1
[»] chr3 (1 HSPs)
chr3 (14-306)||(44546169-44546461)


Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 44546461 - 44546169
Alignment:
Q  14 agatgaagcagctgagattgtataatactggatggaccatctgtgatctttatcaagtctgagtcggcttttggatcgttaatgtaaaatttgtgaagaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44546461 agatgaagcagctgagattgtataatactggatggaccatctgtgatctttatcaagtctgagtcggcttttggatcgttaatgtaaaatttgtgaagaa 44546362  T
Q  114 g---gttgtagagctttttcttttgagtattagggtacctaatcttgtgaagaagaaggaaatcatataaatctttttcatgatcccatgttctctttct 210  Q
    |   || ||||||||||||||||||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  44546361 gaaggtcgtagagctttttcttttgagtattagggtccctaatcttgtgaagaag---gaaatcatataaatctttttcatgatcccatgttctctttct 44546265  T
Q  211 agggttcttctctgaagggggtgccattttttatgttagaaatggttttgatgtgtgnnnnnnntcttttgaagaagaacaaagatggaagaagat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  44546264 agggttcttctctgaagggggtgccattttttatgttagaaatggttttgatgtgtgaaaaaaatcttttgaagaagaacaaagatggaagaagat 44546169  T

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