View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11358_low_3 (Length: 230)
Name: NF11358_low_3
Description: NF11358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11358_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 52140746 - 52140883
Alignment:
| Q |
24 |
tagtggaagatgtatagaaaattgtaaaagtaagtttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgct |
123 |
Q |
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| T |
52140746 |
tagtggaagatgtatagaaaattgtaaaagtaagcttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgct |
52140845 |
T |
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| Q |
124 |
aatttaattcgatgtatttatgtacaaacagttgccac |
161 |
Q |
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| T |
52140846 |
aatttaattcgatgtatttatgtacaaacagttgccac |
52140883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 52140901 - 52140944
Alignment:
| Q |
167 |
agcttgattttgagttctcttatcctcctctgcaattggccaac |
210 |
Q |
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| T |
52140901 |
agcttaattttgagttctcttaatctcctctgcaattggccaac |
52140944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 52131249 - 52131281
Alignment:
| Q |
62 |
gtatttattacttagagattggaaattggaatg |
94 |
Q |
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| T |
52131249 |
gtatttattactaagagattggaaattggaatg |
52131281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 17524955 - 17524854
Alignment:
| Q |
36 |
tatagaaaattgtaaaagtaagtttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgctaatttaattcga |
135 |
Q |
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| T |
17524955 |
tatagaaaattgtaaaagtaactt-ggtatttattacttagagattggaaattggaatgtatgaagtcctactggccacggtattgctaatttaattcga |
17524857 |
T |
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| Q |
136 |
tgt |
138 |
Q |
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||| |
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| T |
17524856 |
tgt |
17524854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 17524571 - 17524495
Alignment:
| Q |
142 |
tatgtacaaacagttgccacttacgag---------cttgattttgagttctcttatcctcctctgcaattggccaa |
209 |
Q |
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| T |
17524571 |
tatgtacaaacagttgccacttacgagtaattaaagcttaattttgagttctcttaatctcctctgcaattggccaa |
17524495 |
T |
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