View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11359_high_2 (Length: 395)
Name: NF11359_high_2
Description: NF11359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11359_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 120 - 343
Target Start/End: Original strand, 36932361 - 36932584
Alignment:
| Q |
120 |
ttttgttttgttgcctgcaacagcaagagacgcattgaagcaactagcaacagagaacgaaaatcaaagaagtgggaacaatgtcgtttatgaaaggaga |
219 |
Q |
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| T |
36932361 |
ttttgttttgttgcctgcaacagcaagaggcgcattgaagcaactagcaacagagaacgaaaatcaaagaagtgggaacaatgtcgtttatgaaaggaga |
36932460 |
T |
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| Q |
220 |
tttgctttctcggtccagaaagctcgtgaagggtttggccaaggccgagcccgtttggctcaaagccatggaacagttaatctcctgatctttcatgttt |
319 |
Q |
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| T |
36932461 |
tttgctttctcggtccagaaagctcgtcaagggtttggccaaggccgagcccgtttggctcaaagccatggaacagttaatctcctgatctttcatgttt |
36932560 |
T |
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| Q |
320 |
gaacttattttctcatacaatgtc |
343 |
Q |
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| T |
36932561 |
gaacttattttctcttacaatgtc |
36932584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 36932313 - 36932357
Alignment:
| Q |
32 |
gaaactgaaactgtgttatttgatttttaactgaaattgaaactg |
76 |
Q |
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| T |
36932313 |
gaaattgaaactgtgttatttgatttttaactgaaattgaaactg |
36932357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 187 - 298
Target Start/End: Original strand, 990311 - 990422
Alignment:
| Q |
187 |
agaagtgggaacaatgtcgtttatgaaaggagatttgctttctcggtccagaaagctcgtgaagggtttggccaaggccgagcccgtttggctcaaagcc |
286 |
Q |
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| T |
990311 |
agaagtgggaacaatgtcgtttatgaaaggagatttgctttctcggtccagaaagctcgtcaagggtttggccatggccgaacctgtttggctcaaagcc |
990410 |
T |
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| Q |
287 |
atggaacagtta |
298 |
Q |
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| T |
990411 |
atggaacagtta |
990422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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