View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11359_high_4 (Length: 382)
Name: NF11359_high_4
Description: NF11359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11359_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 28 - 354
Target Start/End: Original strand, 4761328 - 4761652
Alignment:
| Q |
28 |
tcatgactaagtggaaccagaaccatttttcttattatatcttaccatgcatagatttgttaacaatttttgttaatgtttgttacaatatgttaatctc |
127 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4761328 |
tcatgactaagtggaaccagaatcatttttcttattatatcttaccatgcatagatttgttaacaatttttgttaatgtttgttacaatatgttaatctc |
4761427 |
T |
|
| Q |
128 |
accatttacgtaacagaaaatatcaataggcggggtttgttggtaaaccataataattaataattacattataattaaggttgcgtttatacccaattgt |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4761428 |
accatttacgtaacagaaaatatcaataggcagggtttattggtaaaccataataattaataattacattataattaaggttgcgtttatacccaattgt |
4761527 |
T |
|
| Q |
228 |
tctatgaaaaggacatattcatacacgcaattgaaatcgttaccacaagacaagacaacatcattcataacacaatggttcttttcagtcctattaaaat |
327 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4761528 |
tcaatgaaaaggac--attcatacacgcaattgaaatcgttaccacaagacaagacaacatcattcataacacaatggttcttttcagtcctattaaaat |
4761625 |
T |
|
| Q |
328 |
taaattgaggtacaagaaacatttgat |
354 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
4761626 |
taaattgaggtacaagaaacatttgat |
4761652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University