View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1135_high_10 (Length: 369)
Name: NF1135_high_10
Description: NF1135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1135_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 20 - 359
Target Start/End: Original strand, 2446655 - 2446986
Alignment:
| Q |
20 |
accttttaactatttttaaatgctaatatttgaatatgttctagcaaattaccttcaactctccgactaattgattcgtttccagctcgctttggctcgc |
119 |
Q |
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| T |
2446655 |
accttttaactatttttaaatgctaatatttgaatatgttctagcaaagtaccttcaactctccgactaattgattcgtttccagctcgctttggctcgc |
2446754 |
T |
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| Q |
120 |
ttagcgaacatgcatgcatgttttcctttcaactctttgacttgactcgctttggcttgctctcagctcacttagtgaactgactagaattcttgatgtt |
219 |
Q |
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| T |
2446755 |
ttagcgaacatgcatgcatgttttcctttcaactctttgacttgacttgctttggcttgctctcagctcacttagtgaactgactagaattcttgatgtt |
2446854 |
T |
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| Q |
220 |
ccatcatccaatcatcctttgatcattcaacctataaatacaattaaaataggtaaccaaattagctaatatttacaatgaactggggtattttcatttg |
319 |
Q |
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| T |
2446855 |
cc--------atcatcctatgatcattcaacctataaatacaattaaaataggtaaccaaattagctaatatttacaatgaactggggtattttcatttg |
2446946 |
T |
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| Q |
320 |
atttcttgcaaaacaagtaaataagtgccttgtgtctgtg |
359 |
Q |
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| T |
2446947 |
atttcttgcaaaacaagtaaataagtgccttgtgtgtgtg |
2446986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 3921004 - 3920899
Alignment:
| Q |
164 |
actcgctttggcttgctctcagctcacttagtgaactgactagaa-------ttcttgatgttccatcatccaatcatcctttgatcattcaacctataa |
256 |
Q |
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|||| |||||||| ||||||| ||| ||||||||| ||||||||| ||| |||| || |||||||||||||||||||||||||||| |||||| |
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| T |
3921004 |
actcactttggctcgctctcaactcgcttagtgaattgactagaacttagaattcatgatcttttatcatccaatcatcctttgatcattcaaactataa |
3920905 |
T |
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| Q |
257 |
atacaa |
262 |
Q |
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|||||| |
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| T |
3920904 |
atacaa |
3920899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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