View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1135_high_17 (Length: 251)
Name: NF1135_high_17
Description: NF1135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1135_high_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 4711856 - 4712076
Alignment:
| Q |
30 |
atttactcccacaataattctttaacannnnnnncttatactccccaaataagtaagtgtcaaagcaatgagtttaagcatgtgaattcggtggataaag |
129 |
Q |
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| T |
4711856 |
atttactcccacaataattctttaacatttttttcttatattccccaaataagtaagtgtcaa-gcaatgagtttaagcatgtgaattcggtggataaag |
4711954 |
T |
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| Q |
130 |
tagaattagctggcactggcatactcttcctcccaagtttgcatgcaacaaagctgacaaaaatgttactttgaattatgtatgccaaatggaaaacgtt |
229 |
Q |
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| T |
4711955 |
tagaattagctggcactggcatactcttcctcccaagtttgcatgcaacaaagctgacaaaaatgttactttgaattatgtatgccaaatggaaaacgtt |
4712054 |
T |
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| Q |
230 |
ccaaaactttggtttttccttt |
251 |
Q |
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| T |
4712055 |
ccaaaactttggtttttccttt |
4712076 |
T |
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