View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1135_high_2 (Length: 566)
Name: NF1135_high_2
Description: NF1135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1135_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 134 - 541
Target Start/End: Complemental strand, 51856711 - 51856304
Alignment:
| Q |
134 |
agtttgaagggtaacaagccactcttatattggttgttgattattaaacagggaacataataataagacatgattctagtgaaattggtcctgcaatgcg |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
51856711 |
agtttgaagggtaacaagccactcttatattggttgttgattattaaacagggaacataataataagacatgattctagtgaaattggtcctgcaatgtg |
51856612 |
T |
|
| Q |
234 |
tgactttaatcaatctcgttttaaaacaggtttaatcaatctagtttgaagggtaacaagccactcttatattgctgnnnnnnnagacgaaaattagaga |
333 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51856611 |
tgactttaatcaatctcgttttaaatcaggtttaatcgatctagtttgaagggtaacaagccactcttatattgctgtttttttagacgaaaattagaga |
51856512 |
T |
|
| Q |
334 |
tgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggcattac |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856511 |
tgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggcattac |
51856412 |
T |
|
| Q |
434 |
agaaaaataaaatcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctattttcccttttgacaatgta |
533 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856411 |
agaaaaataaaatcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctattttcccttttgacaatgta |
51856312 |
T |
|
| Q |
534 |
gatactta |
541 |
Q |
| |
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|||||||| |
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| T |
51856311 |
gatactta |
51856304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 51856702 - 51856538
Alignment:
| Q |
1 |
ggtaacaagccactcttatattggttgttgattattaaacagggaacataataataagacatgattctagtgaaattggtcctgcaatgcgtgactttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51856702 |
ggtaacaagccactcttatattggttgttgattattaaacagggaacataataataagacatgattctagtgaaattggtcctgcaatgtgtgactttaa |
51856603 |
T |
|
| Q |
101 |
tcaatctcgttttaaaacaggtttaatcaatctagtttgaagggtaacaagccactcttatattg |
165 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51856602 |
tcaatctcgttttaaatcaggtttaatcgatctagtttgaagggtaacaagccactcttatattg |
51856538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 276 - 541
Target Start/End: Complemental strand, 8945755 - 8945490
Alignment:
| Q |
276 |
agtttgaagggtaacaagccactcttatattgctgnnnnnnnagacgaaaattagagatgaaaatcagtctcaaagttcaatgtaatgttaactattact |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945755 |
agtttgaagggtaacaagccactcttatattgctgtttttttagacgaaaattatagatgaaaatcagtctcaaagttcaatgtaatgttaactattact |
8945656 |
T |
|
| Q |
376 |
gttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaataaaatcaatttaactaaaagtagcaacattatta |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945655 |
gttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaataaaatcaatttaactaaaagtagcaacattatta |
8945556 |
T |
|
| Q |
476 |
tacataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatactta |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8945555 |
tacataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatactta |
8945490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 165
Target Start/End: Complemental strand, 8945755 - 8945724
Alignment:
| Q |
134 |
agtttgaagggtaacaagccactcttatattg |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
8945755 |
agtttgaagggtaacaagccactcttatattg |
8945724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 330 - 446
Target Start/End: Original strand, 128421 - 128536
Alignment:
| Q |
330 |
gagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggca |
429 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||||| |||||| |||| |||||||||||||||||||||||||||| | |
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| T |
128421 |
gagatgaaaattagtctcaaagttcaatgtattattaactattactgttcttttgta-gcaatactcttaacaatttattgcaacaataggtcaaaggta |
128519 |
T |
|
| Q |
430 |
ttacagaaaaataaaat |
446 |
Q |
| |
|
||||||||||| ||||| |
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|
| T |
128520 |
ttacagaaaaaaaaaat |
128536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 45480376 - 45480441
Alignment:
| Q |
52 |
taataagacatgattctagtgaaattggtcctgcaatgcgtgactttaatcaatctcgttttaaaa |
117 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||| | ||||||||||||||||||||||||||| |
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|
| T |
45480376 |
taataagttatgattctagtcaaattggtactgcaacgtgtgactttaatcaatctcgttttaaaa |
45480441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 45480376 - 45480441
Alignment:
| Q |
194 |
taataagacatgattctagtgaaattggtcctgcaatgcgtgactttaatcaatctcgttttaaaa |
259 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||| | ||||||||||||||||||||||||||| |
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|
| T |
45480376 |
taataagttatgattctagtcaaattggtactgcaacgtgtgactttaatcaatctcgttttaaaa |
45480441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 43262960 - 43262898
Alignment:
| Q |
134 |
agtttgaagggtaacaagccactcttatattggttgttgattattaaacagggaacataataa |
196 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||| |||||| |||||||||| |
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|
| T |
43262960 |
agtttgaagggtaacaatccactctcatattggttgttgattattgaacaggcaacataataa |
43262898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43262951 - 43262898
Alignment:
| Q |
1 |
ggtaacaagccactcttatattggttgttgattattaaacagggaacataataa |
54 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
43262951 |
ggtaacaatccactctcatattggttgttgattattgaacaggcaacataataa |
43262898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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