View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1135_high_3 (Length: 541)
Name: NF1135_high_3
Description: NF1135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1135_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 29 - 472
Target Start/End: Original strand, 36181840 - 36182283
Alignment:
| Q |
29 |
attaagtacctttaaaggaagcatgtagcatatgaacatgtatctccggaagctagctatgttgctaaacacagtaatattgccaaccttaatcgatttt |
128 |
Q |
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| T |
36181840 |
attaactacctttaaaggaagcatgtagcatatgaacatgtatctccggaagctagctatgttgctaaacacagtaatattgccaaccttaatcgatttt |
36181939 |
T |
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| Q |
129 |
ccatccttgtttatcaatggttttttggtgaaatatctaaggttatagtctctgaaagtacggtaggtaattggatttctaatagaggaaccaacatgat |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
36181940 |
ccatccttgtttatcaatggttttttggtgaaatatctaaggttatagtctctgaaagtacggtacgtaattgggtttctaatagaggaaccaacatgat |
36182039 |
T |
|
| Q |
229 |
atatgatgttatcactaggttgatttgcatgagccatcatagctactataattgcatttaccaccatgtctgctggtatctgctcaaaattcaacatcaa |
328 |
Q |
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| T |
36182040 |
atatgatattatcattaggttgatttgcatgagccatcatagctactataattgcatttaccaccatgtctgctggtatctgctcaaaattcaacatcaa |
36182139 |
T |
|
| Q |
329 |
tattaactaatgcatcattttgtggaattgatcaaaaacaagaaaatttttatttggtgactcaccacgtcgaaaactgcgtcgagatcagccatgaagc |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
36182140 |
tattaactaatgcatcattttgtggaattgatcaaaaacaggaaaaaatttatttggtgactcaccacgtcgaaaactgcatcgagatccgccatgaagc |
36182239 |
T |
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| Q |
429 |
ttgttaattttcctttaccataagcaacgactatactgcctatg |
472 |
Q |
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| T |
36182240 |
ttgttaattttcctttaccataagcaacgactatactgtctatg |
36182283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 36194256 - 36194325
Alignment:
| Q |
243 |
ctaggttgatttgcatgagccatcatagctactataattgcatttaccaccatgtctgctggtatctgct |
312 |
Q |
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| T |
36194256 |
ctaggttgatttgcatgagccaccatagccactaacattgcattgaccaccatgtcagctggtatctgct |
36194325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 456
Target Start/End: Complemental strand, 19505977 - 19505945
Alignment:
| Q |
424 |
gaagcttgttaattttcctttaccataagcaac |
456 |
Q |
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| T |
19505977 |
gaagcatgttaattttcctttaccataagcaac |
19505945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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