View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1135_high_4 (Length: 525)
Name: NF1135_high_4
Description: NF1135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1135_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 98 - 479
Target Start/End: Complemental strand, 18814536 - 18814160
Alignment:
| Q |
98 |
gatgtgccactatgcttacgttgttacttctctatttaatataattccttttggaaaaatacaaaattaaaatgtacaaagtataaactaaataagatat |
197 |
Q |
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| T |
18814536 |
gatgtgccgttatgcttacgttgttacttctctatttaatataattccttttggaaaaatacaaaattaacatgtacaaagtataaa-----taagatat |
18814442 |
T |
|
| Q |
198 |
tctgacatgtaaaaccttgtactgtattttgaaatttacctagctagattaaatactgtgatttagaaccgtttttcatatattaacatgtttcaagcag |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18814441 |
tctgacatgtaaaaccttgtactgtattttgaaatttacctagctagattaattactgtgatttagaactgtttttcatatattaacatgtttcaagcag |
18814342 |
T |
|
| Q |
298 |
ttaggttatctcgcacagcctgtccaaattacttgtggttgcaagttactcaattcccaaccatgcccatgaagtctaaccaaaaagcaagattgagtat |
397 |
Q |
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| T |
18814341 |
ttaggttacctcgcacagcctgtccaaattacttgtggttgcaagttactcaattcccaaccatgcccatgaagtctaaccaaaaagcaagattgagtat |
18814242 |
T |
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| Q |
398 |
ttgatgcaaagttaagacgcagcttcattgaaacgtgtgatttaatgccaaattgccatctcaaaagcatgcaaaacctttg |
479 |
Q |
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| T |
18814241 |
ttgatgcaaagttaagacgcagcttcattgaaacgtgtgatttaatgccaaattgccatctcaaaagcatgcaagacctttg |
18814160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 100 - 479
Target Start/End: Original strand, 18813400 - 18813782
Alignment:
| Q |
100 |
tgtgccactatgcttacgttgttacttctctatttaatataattccttttggaaaaatacaaaattaaaatgtacaaagtataaactaaataagatattc |
199 |
Q |
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| T |
18813400 |
tgtgccaatatgct-acgttctcacttctctatttaatatacttccttttggcaaaa-accaaattaacatgtacaaagtacaaactacaaaagactttc |
18813497 |
T |
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| Q |
200 |
tgacatgtaa----aaccttgtactgtattttgaaatttacctagctagattaaatactgtgatttagaaccgtttttcatatattaacatgtttcaagc |
295 |
Q |
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||| |||||| |||| ||||||||||||||||||| ||||||| |||| || ||| || |||||| |||||||||| ||||||||||||||| |
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| T |
18813498 |
tgatatgtaagtaaaaccacctactgtattttgaaatttatctagctaaattagttattgtaatctagaactcattttcatataataacatgtttcaagc |
18813597 |
T |
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| Q |
296 |
agttaggttatctcgcacagcctgtccaaattacttgtggttgcaagttactcaattcccaaccatgcccatg-aagtctaaccaaaaagcaagattgag |
394 |
Q |
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| T |
18813598 |
agttaggttccctcgcacagcccgtccaaattacttgtggttgcaaattacttatttcccaaccatgcccatgaaagtctaaccaaaaagtaagattgag |
18813697 |
T |
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| Q |
395 |
tatttgatgcaaagttaagacgcagcttcattgaaacgtgtgatttaatgccaaattgccatctcaaaagcatgcaaaacctttg |
479 |
Q |
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| T |
18813698 |
tttttgatgcaaacttaagacgcaaattcgacgaaacatgtgatttaacgtcaaaatgccaccttaaatgcatgcaaaacctttg |
18813782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 151 - 370
Target Start/End: Complemental strand, 18791963 - 18791745
Alignment:
| Q |
151 |
gaaaaatacaaaattaaaatgtacaaagtataaactaaataagatattctgacatgtaaaaccttgtactgtattttgaaatttacctagctagattaaa |
250 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
18791963 |
gaaaaatacaaaattaacatgtacaaagtataaactacataagatattctgacatgtaaaaccactcactgtatttggaaatttacctagctagattaat |
18791864 |
T |
|
| Q |
251 |
tactgtgatttagaaccgtttttcatatattaacatgtttcaagcagttaggttatctcgcacagcctgtccaaattacttgtggttgcaagttactcaa |
350 |
Q |
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|| ||||||||||||| |||||||||||| |||||| ||| ||||||||||||| | | ||||||||||||||| |||| ||||||| | |||||| |
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| T |
18791863 |
tattgtgatttagaactgtttttcatataataacat-ttttaagcagttaggttcccctagaaagcctgtccaaattatttgtcgttgcaaatcactcaa |
18791765 |
T |
|
| Q |
351 |
ttcccaaccatgcccatgaa |
370 |
Q |
| |
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|||||||||| | ||||||| |
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| T |
18791764 |
ttcccaaccaagtccatgaa |
18791745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 129 - 370
Target Start/End: Original strand, 18791496 - 18791738
Alignment:
| Q |
129 |
ctatttaatataattccttttggaaaaatacaaaattaaaatgtacaaagtataaactaaataagatattctgacatgtaa----aaccttgtactgtat |
224 |
Q |
| |
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|||||||||||| |||||||||||| || || ||||||| |||||||||||| |||||| | |||| || ||| |||||| |||| |||||||| |
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| T |
18791496 |
ctatttaatatacttccttttggaataa-accaaattaacatgtacaaagtacaaactacaaaagactttatgatatgtaagtaaaaccacctactgtat |
18791594 |
T |
|
| Q |
225 |
tttgaaatttacctagctagattaaatactgtgatttagaaccgtttttcatatattaacatgtttcaagcagttaggttatctcgcacagcctgtccaa |
324 |
Q |
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||||||||||||||||||||||||| || ||| || |||||| | ||||||||| ||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
18791595 |
tttgaaatttacctagctagattaattattgtaatctagaac--tctttcatataataacatgtttcaagcagttaggttacctcgcacaacctgtccaa |
18791692 |
T |
|
| Q |
325 |
attacttgtggttgcaagttactcaattcccaaccatgcccatgaa |
370 |
Q |
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||||| ||||||||||| | ||||||||||| ||||| |||||||| |
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| T |
18791693 |
attacctgtggttgcaactcactcaattccctaccatacccatgaa |
18791738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 6e-69; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 98 - 324
Target Start/End: Complemental strand, 11329058 - 11328836
Alignment:
| Q |
98 |
gatgtgccactatgcttacgttgttacttctctatttaatataattccttttggaaaaatacaaaattaaaatgtacaaagtataaactaaataagatat |
197 |
Q |
| |
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||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| |
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| T |
11329058 |
gatgtgccactatgcttacattgttacttctttatttaatataattccttttggaaaaatacaaaattaaaatctacaaagtataaactgcagaagatat |
11328959 |
T |
|
| Q |
198 |
tctgacatgtaaaaccttgtactgtattttgaaatttacctagctagattaaatactgtgatttagaaccgtttttcatatattaacatgtttcaagcag |
297 |
Q |
| |
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|||||||||||||||| ||||||| || ||||||||||| |||||||| |||||||| ||||||| ||||||| |||| |||||| |||||||||| |
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| T |
11328958 |
tctgacatgtaaaaccacttactgtaattggaaatttacct---tagattaattactgtga-ttagaactgtttttcgtataataacatatttcaagcag |
11328863 |
T |
|
| Q |
298 |
ttaggttatctcgcacagcctgtccaa |
324 |
Q |
| |
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||||||| |||||||||||||||||| |
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| T |
11328862 |
ttaggttccctcgcacagcctgtccaa |
11328836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 222 - 479
Target Start/End: Original strand, 11327847 - 11328105
Alignment:
| Q |
222 |
tattttgaaatttacctagctagattaaatactgtgatttagaaccgtttttcatatattaacatgtttcaagcagttaggttatctcgcacagcctgtc |
321 |
Q |
| |
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||||||||||||||||||| |||||||| || ||| || |||||| ||||||||||| |||||||||||||||||||||||| || |||||| ||||| |
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| T |
11327847 |
tattttgaaatttacctagatagattaattattgtaatctagaactctttttcatataataacatgtttcaagcagttaggttcccttgcacagtctgtc |
11327946 |
T |
|
| Q |
322 |
caaattacttgtggttgcaagttactcaattcccaaccatgcccatg-aagtctaaccaaaa-agcaagattgagtatttgatgcaaagttaagacgcag |
419 |
Q |
| |
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||||||||||||||||| | | ||| |||||| ||||||||||| || ||||| |||| || |||| || ||||||||||||||||||||| ||| |
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| T |
11327947 |
caaattacttgtggttgtatgaaacttcattccctgccatgcccatgaaaatctaagaaaaacagtaagagtgggtatttgatgcaaagttaagatgcaa |
11328046 |
T |
|
| Q |
420 |
cttcattgaaacgtgtgatttaatgccaaattgccatctcaaaagcatgcaaaacctttg |
479 |
Q |
| |
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|||| ||||||| |||| ||||| |||| ||||| |||||| |||||||||||||||| |
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| T |
11328047 |
cttcgttgaaacatgtg-tttaacatcaaaatgccacctcaaatgcatgcaaaacctttg |
11328105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 35869311 - 35869250
Alignment:
| Q |
117 |
gttgttacttctctatttaatataattccttttggaaaaatacaaaattaaaatgtacaaagt |
179 |
Q |
| |
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||||| ||||||| |||| ||||| |||||||||| |||| |||||||||| ||||||||||| |
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|
| T |
35869311 |
gttgtcacttctccatttgatatacttccttttggcaaaa-acaaaattaacatgtacaaagt |
35869250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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