View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1135_high_6 (Length: 505)
Name: NF1135_high_6
Description: NF1135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1135_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 23 - 500
Target Start/End: Complemental strand, 41813235 - 41812758
Alignment:
| Q |
23 |
aatttggtgctggtttaaactttttagggtcaatattaaactttcggctaaattagaacattcagaatctgcttttgggattgctctattgctgagtatg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41813235 |
aatttggtgctggtttaaactttttagggtcaatattaaactttcggctaaattagaacattcagaatctgcttttgggattgctctattgctgagtatg |
41813136 |
T |
|
| Q |
123 |
gttcgtagttattgataagtggataggtcgatcaagcagagcaagagcgaccctttcggccaggcccaaacattttttgggttaatcttatcaagtccta |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41813135 |
gttcgtagttattgataagtggataggtcgatcaagcagagcaagagcgaccctttcggccaggcccaaacattttttgggttaatcttatcaagtccta |
41813036 |
T |
|
| Q |
223 |
gtttgtaacagaatatgttcactctaatggagatgcagtgctctaaacccacctaactagtccactggcgaatgaaaaataattttatcatcaaaatcaa |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41813035 |
gtttgtaacagaatatgttcactctaatggagatgcagtgctctaaatccacctaactagtccactggcgaatgaaaaataattttatcatcaaaatcaa |
41812936 |
T |
|
| Q |
323 |
tacaactaattattttcttacgaactgtacacaactcaaatgagacgcttgtaagttatagcgatatggagggaatatttgtttaagaccataatgccag |
422 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41812935 |
tacaactaattgttttcttacgaactgtacacaactcaaatgagacgcttataagttatagcgatatggagggaatatttgtttaagaccataatgccag |
41812836 |
T |
|
| Q |
423 |
tctgcttaataagttacatggaacaaaaaatttctatactgagcaaaacataaagaccccacttgtccctatgatact |
500 |
Q |
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| T |
41812835 |
tctgcttaataagttacatggaacaaaaaatttctatactgagcaaaacataaagaccccacttgtcactatgatact |
41812758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 10098035 - 10097995
Alignment:
| Q |
302 |
taattttatcatcaaaatcaatacaactaattattttctta |
342 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| ||||||||| |
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|
| T |
10098035 |
taattttaccatcaaaatcaatacaattaatcattttctta |
10097995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 978901 - 978841
Alignment:
| Q |
304 |
attttatcatcaaaatcaatacaactaattattttcttacgaactgtacacaactcaaatg |
364 |
Q |
| |
|
|||||||||| ||||||| ||||||||| ||||||||| ||| |||| |||||||||||| |
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| T |
978901 |
attttatcattgaaatcaacacaactaatcattttcttaagaattgtaaacaactcaaatg |
978841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 31665775 - 31665730
Alignment:
| Q |
293 |
aatgaaaaataattttatcatcaaaatcaatacaactaattatttt |
338 |
Q |
| |
|
|||||||| |||||||| ||| |||||||| ||||||||||||||| |
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|
| T |
31665775 |
aatgaaaattaattttaccattaaaatcaacacaactaattatttt |
31665730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 28202359 - 28202319
Alignment:
| Q |
302 |
taattttatcatcaaaatcaatacaactaattattttctta |
342 |
Q |
| |
|
|||||||| |||||||||||| |||| |||||||||||||| |
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| T |
28202359 |
taattttaccatcaaaatcaacacaattaattattttctta |
28202319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 41062201 - 41062161
Alignment:
| Q |
302 |
taattttatcatcaaaatcaatacaactaattattttctta |
342 |
Q |
| |
|
||||||||||||||||||||| | || |||||||||||||| |
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|
| T |
41062201 |
taattttatcatcaaaatcaacataattaattattttctta |
41062161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 52290965 - 52291005
Alignment:
| Q |
302 |
taattttatcatcaaaatcaatacaactaattattttctta |
342 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| ||||||||| |
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|
| T |
52290965 |
taattttaccatcaaaatcaatacaattaatcattttctta |
52291005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 9458312 - 9458272
Alignment:
| Q |
302 |
taattttatcatcaaaatcaatacaactaattattttctta |
342 |
Q |
| |
|
|||||||| |||||||||||| |||| |||||||||||||| |
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| T |
9458312 |
taattttaccatcaaaatcaacacaattaattattttctta |
9458272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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