View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1135_high_7 (Length: 501)
Name: NF1135_high_7
Description: NF1135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1135_high_7 |
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| [»] scaffold0179 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 16 - 310
Target Start/End: Original strand, 34569356 - 34569650
Alignment:
| Q |
16 |
atggagaaaattctagcaaggagtagttaagttttgatgaccagacaaagataccatgtaacccaaaagatagattaagattctgattttgcaagaagaa |
115 |
Q |
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| T |
34569356 |
atggagaaaattctagcaaggagtagttaagttttgatgaccagacaaagataccatgtaacccaaaagatagattaagattctgattttgcaagaagaa |
34569455 |
T |
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| Q |
116 |
ctatgacaaaagagaacatcttgggatatcttgtgaccccacttttgcatcaataccaaacaacaaaattgatcaatgagttttgtgagatttaaataaa |
215 |
Q |
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| T |
34569456 |
ctatgacaaaagagaacatcttgggatatcttgtgaccccacttttgcatcaataccaaacaacaaaattgatcaatgagttttgtgagatttaaataaa |
34569555 |
T |
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| Q |
216 |
acatctcccttaatttgaagaacaaattaagattattggataaaggagcacaatgagtactccaatccaatccaatacaatcaatttctatatga |
310 |
Q |
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| T |
34569556 |
acatctcccttaatttgaagaacaaattaagattattggataaaggagcacaatgagtactccaatccaatccaatacaatcaatttctatatga |
34569650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 380 - 495
Target Start/End: Original strand, 894634 - 894749
Alignment:
| Q |
380 |
tccgggatttgaaactcgaaccgtgcataatataaggaataaccctaacaactgaaaaaaggtattttgcctttatttatatgtatagatgatcatacgt |
479 |
Q |
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| T |
894634 |
tccggggttcgaacctcgacccctgcatataatatgcaatatccctaccaactaaaataagttattttgcctttatttataggtacagatgatcatgcgt |
894733 |
T |
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| Q |
480 |
ctgcgacacaatattc |
495 |
Q |
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| T |
894734 |
ctgcgacacaatattc |
894749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 495
Target Start/End: Complemental strand, 5637 - 5587
Alignment:
| Q |
445 |
tttgcctttatttatatgtatagatgatcatacgtctgcgacacaatattc |
495 |
Q |
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| T |
5637 |
tttgcctttatttataagtatagatgatcatgcggctgcgacacagtattc |
5587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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