View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1135_low_11 (Length: 396)
Name: NF1135_low_11
Description: NF1135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1135_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 368
Target Start/End: Original strand, 10601861 - 10602221
Alignment:
| Q |
8 |
tgagatgaataatgaggaggtgaaggataaaagtccttctataaagaatgatgaagtggagcattcagattatggtagtttagcaacttctactaccttt |
107 |
Q |
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| T |
10601861 |
tgagatgaataatgaggaggtgaaggataaaagtccttctataaagaatgatgaagtggagcattcagattatggtagtgtagcaacttctactaccttt |
10601960 |
T |
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| Q |
108 |
gagaagaagggttcttcttcaaacaagaatgatacatcaaagaaacaaaaagcaaaaagtgtggaaaatgtttctgacgatgatgtaaatgttgccaaag |
207 |
Q |
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| T |
10601961 |
gagaagaagggttcttcttcaaacaagaatgatacatcaaagaaacaaaaagcaaaaagtgtggaaaatgtttctgacgatgatgtaaatgttgccaaag |
10602060 |
T |
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| Q |
208 |
ccaaagaaagggctaaacctaatgaaactgtgaatcttcttgatgatgttaatgttgctaaagccaaatgcaaatcccatgtcaaagccaaagacaatgc |
307 |
Q |
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| T |
10602061 |
ccaaagaaagggctaaacctaatgaaactgtgaatcttcgtgatgatgttaatgttgctaaagccaaatgcaaatcccatgtcaaagccaaagacaatgc |
10602160 |
T |
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| Q |
308 |
caaatcttatgaaagcgtggatgtttcggattctgacgaaggaaaagagcatgttaaaggt |
368 |
Q |
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| T |
10602161 |
caaaccttatgaaagcgtggatgtttctgattctgacgaaggaaaagagcatgtcaaaggt |
10602221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 16977747 - 16977651
Alignment:
| Q |
20 |
tgaggaggtgaaggataaaagtccttctataaagaatgatgaagtggagcattcagattatggtagtttagcaacttctactacctttgagaagaag |
116 |
Q |
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| T |
16977747 |
tgaggagatgagcgataaaaatccttctgtaaacaatgatgaagttgagcattcagattatggtagtgtagcaatttctaatgcctttgagaagaag |
16977651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 16977812 - 16977747
Alignment:
| Q |
18 |
aatgaggaggtgaaggataaaagtccttctataaagaatgatgaagtggagcattcagattatggt |
83 |
Q |
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| T |
16977812 |
aatgaggagatgaaggataaaagtccttctgtaaacaatggtgaaatggagcattcagattatggt |
16977747 |
T |
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