View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1135_low_18 (Length: 296)
Name: NF1135_low_18
Description: NF1135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1135_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 30 - 288
Target Start/End: Original strand, 9212980 - 9213238
Alignment:
| Q |
30 |
acaaggtcttttttggtctaccacagttgaagttgtcgttgcactgttattatcgacaatttccatcgtttccatcttcacctttttcgattccttttgt |
129 |
Q |
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| T |
9212980 |
acaaggtcttttttggtctaccacagttgaagttgtcgttgcactgttattatcgacaatttccatcgtttccatcttcacctttttcgattccttttgt |
9213079 |
T |
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| Q |
130 |
tgcactgattctaaatcttcaatctttgattttaactcattgatgtaatccactgcatctgataaaagagaagctttatccatctttgaaacatttggaa |
229 |
Q |
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| T |
9213080 |
tgcactgattctaaatcttcaatctttgattttaactcattgatgtaatccactgcatctgataaaagagaagctttatccatctttgaaacatttggaa |
9213179 |
T |
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| Q |
230 |
ccacagatcttaaagcataaaatctatggtttagtttctctctcctttgtctctctgct |
288 |
Q |
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| T |
9213180 |
ccacagatcttaaagcgtaaaatctatggtttagtttctctctcctttgtctctctgct |
9213238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 40 - 288
Target Start/End: Complemental strand, 9195040 - 9194792
Alignment:
| Q |
40 |
ttttggtctaccacagttgaagttgtcgttgcactgttattatcgacaatttccatcgtttccatcttcacctttttcgattccttttgttgcactgatt |
139 |
Q |
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| T |
9195040 |
ttttggtctaccacaattgaagttgtcgttgcactattattatcgacaattttcatcgttttcatcatcgcctttttcgattccttttgttgccctaatt |
9194941 |
T |
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| Q |
140 |
ctaaatcttcaatctttgattttaactcattgatgtaatccactgcatctgataaaagagaagctttatccatctttgaaacatttggaaccacagatct |
239 |
Q |
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| T |
9194940 |
ttaaatcttcgatctttgcttttaactcattgatgtaatctactgcatcagataacaaagaagctttatccatctttgaaacgtttggaaccacagatct |
9194841 |
T |
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| Q |
240 |
taaagcataaaatctatggtttagtttctctctcctttgtctctctgct |
288 |
Q |
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| T |
9194840 |
taaagcatagaatctatggtttagtttctctctcctttgtctctctgct |
9194792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 288
Target Start/End: Complemental strand, 28081217 - 28081131
Alignment:
| Q |
202 |
gctttatccatctttgaaacatttggaaccacagatcttaaagcataaaatctatggtttagtttctctctcctttgtctctctgct |
288 |
Q |
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| T |
28081217 |
gctttgtccatcttagaaacatttggaaccacagcacgtagagcatagaatttttggttaagcttttctcttctttgtctctctgct |
28081131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 17371053 - 17370995
Alignment:
| Q |
123 |
cttttgttgcactgattctaaatcttcaatctttgattttaactcattgatgtaatcca |
181 |
Q |
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| T |
17371053 |
cttttgttgcactaattctaaattttcaatctttgctttcaactcattgatgtaatcca |
17370995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 24748802 - 24748745
Alignment:
| Q |
123 |
cttttgttgcactgattctaaatcttcaatctttgattttaactcattgatgtaatcc |
180 |
Q |
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| T |
24748802 |
cttttgttgcactgattctaaattttcaatctttgctttcaactcatagatgtaatcc |
24748745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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