View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1135_low_2 (Length: 609)
Name: NF1135_low_2
Description: NF1135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1135_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 365 - 543
Target Start/End: Original strand, 24923214 - 24923392
Alignment:
| Q |
365 |
gctaacaggatgtataagaaagtaatcataagtaacaagaaatctaatccttttcattaaatttcaatttcaaactatgtcaaattgaatatccttcaat |
464 |
Q |
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| T |
24923214 |
gctaacaggatgtataagaaagtaatcataagtaataagaaatgtaatccttttcattaaatttcaatttcaaactatgtcaaattgaatatccttcaat |
24923313 |
T |
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| Q |
465 |
ctcaccgagaattacaagtaagatattaacctaaatatcataacaagaattccagattagaatcgaatattcaaattac |
543 |
Q |
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| T |
24923314 |
ctcaacgaaaattacaagtaagatattaacctaaatatcataacaagaattccagattagaatcgcatattcaaattac |
24923392 |
T |
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Target: chr3; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 30 - 271
Target Start/End: Original strand, 24922946 - 24923172
Alignment:
| Q |
30 |
aactcaccaccagtaaagtgaacttcatttggtttcaaccttataaaagtcaaaacatagtaacaatcggtcggtgctacagtaattaaactattgattc |
129 |
Q |
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| T |
24922946 |
aactcaccaccagtaaagtgaacttcatttggtttcaaccttataaaagtcaaaacatagtaacaatcagttcgcgctatatttattaaactattaattc |
24923045 |
T |
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| Q |
130 |
-ttagataacagaatgtaatggtgctgtagaatgtagataaaagatgcaattcgcaaagtttgacaaatcttgctaccgatcaatgtttaaacacacatg |
228 |
Q |
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| T |
24923046 |
tttagataacagaatgtaatggtgctgtagaatgt-------------aattcgcaaagtttgtcaaatctcactaccaatcaatgtttaaacacacatg |
24923132 |
T |
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| Q |
229 |
taaattcgtgtccacaacaactcacaatgaaaaaccagaagat |
271 |
Q |
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| T |
24923133 |
taaattcgtgtcc---acaactcacaacgaaaaaacagaagat |
24923172 |
T |
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