View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1135_low_9 (Length: 469)
Name: NF1135_low_9
Description: NF1135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1135_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 41812760 - 41812296
Alignment:
| Q |
1 |
actggaaaaattgaattatactagctcacttatccaaatttcaagagaagaacagaactaactctgctcatgatacaggaaaaatcaaattatacacaca |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
41812760 |
actggaaaaatcgaattatactagctcacttatccaaatttcaagagaagaacagaactaactctgctcacgatactggaaaaatcaaattatacacaca |
41812661 |
T |
|
| Q |
101 |
taccagtgtttttaaaacaaaagaatcaattcacagaaagaaaaaatgagctgattatatgctgaatcacgactatacctaactgggaaaatttgcataa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41812660 |
taccagtgtttttaaaacaaaagaatcaattcacagagagaaaaaatgagctgattatatgctgaatcacgactatacctaactgggaaaatttgcataa |
41812561 |
T |
|
| Q |
201 |
aaaatatatgaaaggatttaagctcctctctggcccctttgagtctttgagatgattcccttgagatagacattacactcgcggcgataatcaatcaaca |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41812560 |
aaaatatatgaaaggatttaagcttctctctggcccctttgagtctttgagatgattcccttgagatagacattacactcgcggtgataatcaatcaaca |
41812461 |
T |
|
| Q |
301 |
aacagagctgcctgatggcctccctcttttcctctcccaaatccaacatgccttcctctttctcttttatcaacttctgtagctcttcaactgtcttctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41812460 |
aacagagctgcctgatggcctccctcttttcctctcccaaatccaatattccttcctctttctcttttatcaacttctgtagctcttcaactgtcttctt |
41812361 |
T |
|
| Q |
401 |
aagttcatcaacagttgctgtcacattcatcttctctgattcctcctttcttgcctttgcttcta |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41812360 |
aagttcatcaacagttgctgtcacattcatcttctctgattcctcctttcttgcctttgcctcta |
41812296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 40 - 457
Target Start/End: Complemental strand, 41799511 - 41799088
Alignment:
| Q |
40 |
ttcaagagaagaacagaactaactctgctcatgatacaggaaaaat--caaattatacacacataccagtgtttttaaaacaaaa-------gaatcaat |
130 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| || ||||| ||||||||||||||| | ||||| |||||||||| |||||||| |
|
|
| T |
41799511 |
ttcaagagaagaacaggactaactctgctcatgatatggggaaaatatcaaattatacacacactca--tgtttgtaaaacaaaaaacaaaagaatcaat |
41799414 |
T |
|
| Q |
131 |
tcacagaaagaaaaaatgagctgattatatgctgaatcacgactatacctaactgggaaaatttgcataaaaaa-tatatgaaaggatttaagctcctct |
229 |
Q |
| |
|
||||||||| ||| ||||||| |||||| |||||| || ||||||||||| ||| ||| |||||||| |||| ||||| ||| ||| |||| |
|
|
| T |
41799413 |
tcacagaaa--aaatatgagctatttatatatcaaatcacaacattacctaactggacaaagttgaataaaaaaatatacagaaggacttatgctgctct |
41799316 |
T |
|
| Q |
230 |
ctggcccctttgagtctttgagatgattcccttgagatagacattacactcgcggcgataatcaatcaacaaacagagctgcctgatggcctccctcttt |
329 |
Q |
| |
|
||||||||| | |||||||| |||||| |||||||| | || ||| ||| ||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41799315 |
ctggcccctgcgtgtctttgatatgatttccttgagacggtcactactctcacggtgataatcaatccacaaacagagctgcctgatggcctccctcttt |
41799216 |
T |
|
| Q |
330 |
tcctctcccaaatccaacatgccttcctctttctcttttatcaacttctgtagctcttcaactgtcttcttaagttcatcaacagttgctgtcacattca |
429 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41799215 |
tcctctcccaaatccaatatgccttcctctttctctttcatcgacttctctagctctccaactgtcttcttaagttcaacaacagttgctgtcacattca |
41799116 |
T |
|
| Q |
430 |
tcttctctgattcctcctttcttgcctt |
457 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
41799115 |
tcttctctgattcctcctttcttgcctt |
41799088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 165 - 465
Target Start/End: Complemental strand, 41805766 - 41805465
Alignment:
| Q |
165 |
aatcacgactatacctaactgggaaaatttgcataaaaaatatatgaaaggatttaagctcctctctggcccctttgagtctttgagatgattcccttga |
264 |
Q |
| |
|
||||||||| ||||||| ||| ||| |||||||||||| |||| | || || | || |||||||||||| |||||||||| |||| | |||| | |
|
|
| T |
41805766 |
aatcacgacagtacctaattggacaaagttgcataaaaaaaatatagatgggttcacactgctctctggccccggcgagtctttgatatgaattccttta |
41805667 |
T |
|
| Q |
265 |
gatagacattacactcgcggcgataatcaatcaacaaacagagctgcctgatggcctccctcttttcctctcccaaatccaacatgccttcctctttctc |
364 |
Q |
| |
|
||||| |||| | ||| | | ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| | |||||| || ||||||||||| |
|
|
| T |
41805666 |
gatagtcattgcgctccctgtgataatcaatccgcaaacaaagctgcctgatggcctccctcttttcctctcccaagttcaacataccctcctctttctc |
41805567 |
T |
|
| Q |
365 |
ttttatcaacttctgtagctcttcaactgtcttcttaagttcatcaacagttgctgtcacattcatcttctctga-ttcctcctttcttgcctttgcttc |
463 |
Q |
| |
|
|| |||||||||| ||||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||| |||| |||||||||||||||| || |
|
|
| T |
41805566 |
ttccatcaacttctctagctcttcaactctcttcttaagttcaacaacaattgttgtcacattcatcttctctgatttccccctttcttgcctttgcctc |
41805467 |
T |
|
| Q |
464 |
ta |
465 |
Q |
| |
|
|| |
|
|
| T |
41805466 |
ta |
41805465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 41805843 - 41805799
Alignment:
| Q |
40 |
ttcaagagaagaacagaactaactctgctcatgatacaggaaaaa |
84 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||| |||| |
|
|
| T |
41805843 |
ttcaagagaagaacagaactaactttgctactgatacagggaaaa |
41805799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University