View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11360_high_1 (Length: 269)
Name: NF11360_high_1
Description: NF11360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11360_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 6224939 - 6224688
Alignment:
| Q |
1 |
aaggctttattatttaagttgttgacctcattgcgaatgttgaggttgagaacaacggtatcacagctgagaatgtcaatacaagatagtgtcgtgtttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||| |
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| T |
6224939 |
aaggctttattatttaagttgttgacctcattgcgaatgttgaggttgagaacaacggtatcatagttgagaatgtcaatgcaagatagtgtcgtgtttt |
6224840 |
T |
|
| Q |
101 |
tattgattattcatattcattcctatgtttcttaatgtacaacaatgcttcttgcaccacaaactgtgttgctccctttgtgaagatcctggatgaagaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6224839 |
tattgattattcatattcattcctatgtttcttaatgtacagcaatgcttcttgcaccacaaactgtgttgctccctttgtgaagatcctggatgaagaa |
6224740 |
T |
|
| Q |
201 |
ttcgctaagcaaaagttctgatactcatcatattgatagctagtattgtaac |
252 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6224739 |
ttcgctaagcaaaagttctaatactcatcatattgatagctagtattgtaac |
6224688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 28247127 - 28247178
Alignment:
| Q |
201 |
ttcgctaagcaaaagttctgatactcatcatattgatagctagtattgtaac |
252 |
Q |
| |
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|||| ||||||||| ||||||||||||||||| ||||| ||||||||||||| |
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| T |
28247127 |
ttcggtaagcaaaaattctgatactcatcatactgatatctagtattgtaac |
28247178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 54182364 - 54182123
Alignment:
| Q |
11 |
tatttaagttgttgacctcattgcgaatgttgaggttgagaacaacggtatcacagctgagaatgtcaatacaagatagtgtcgtgtttttattgattat |
110 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
54182364 |
tatttaagttgttgacctcgttgcggatgttgaggttgagaacaagggtatcacagctgagaatgtcaatacaagatagtgttgtgttttgattgattat |
54182265 |
T |
|
| Q |
111 |
tcatattcattcctatgtttcttaatgtacaacaatgcttcttgcaccacaaactgtgttgctccctttgtgaagatcctggatgaagaattcgctaagc |
210 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
54182264 |
tcatattcgttcttatgtttcttaatgtacagcaatgcttcttgcaccacaaactgtcttgctccctttgtgaagatcctggatgaagaattcggtaagc |
54182165 |
T |
|
| Q |
211 |
aaaagttctgatactcatcatattgatagctagtattgtaac |
252 |
Q |
| |
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||| ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
54182164 |
aaatattctgatactcatcatactgatagctagtattgtaac |
54182123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 19748896 - 19748645
Alignment:
| Q |
1 |
aaggctttattatttaagttgttgacctcattgcgaatgttgaggttgagaacaacggtatcacagctgagaatgtcaatacaagatagtgtcgtgtttt |
100 |
Q |
| |
|
|||| |||| ||||||||||||||||||| |||| |||||||||||||| ||||| ||||||||| |||||||||||||| ||||||||||| ||||||| |
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| T |
19748896 |
aaggttttaatatttaagttgttgacctcgttgcaaatgttgaggttgaaaacaagggtatcacaactgagaatgtcaatgcaagatagtgttgtgtttt |
19748797 |
T |
|
| Q |
101 |
tattgattattcatattcattcctatgtttcttaatgtacaacaatgcttcttgcaccacaaactgtgttgctccctttgtgaagatcctggatgaagaa |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19748796 |
gattgattattcatattcattcttatgtttcttaatgtacaacaatgcttcttgcaccacaaactgtcttgctccctttgtgaagatcctggatgaagaa |
19748697 |
T |
|
| Q |
201 |
ttcgctaagcaaaagttctgatactcatcatattgatagctagtattgtaac |
252 |
Q |
| |
|
|||| ||||||||| || |||||||||||||| ||||||||||||||||||| |
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|
| T |
19748696 |
ttcggtaagcaaaaattttgatactcatcatactgatagctagtattgtaac |
19748645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 5076457 - 5076707
Alignment:
| Q |
1 |
aaggctttattatttaagttgttgacctcattgcgaatgttgaggttgagaacaacggtatcacagctgagaatgtcaatacaagatagtgtcgtgtttt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| |||||||||||||| ||||||| || ||||||| |
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| T |
5076457 |
aaggctttaatatttaagttgttgacctcgttgtgaatgttgaggttgagaacaagggtatcacaactgagaatgtcaatgcaagataatgatgtgtttt |
5076556 |
T |
|
| Q |
101 |
tattgattattcatattcattcctatgtttcttaatgtacaacaatgcttcttgcaccacaaactgtgttgctccctttgtgaagatcctggatgaagaa |
200 |
Q |
| |
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|||||| ||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||| ||||||||| ||||||||||||||||||| || |
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| T |
5076557 |
gattgat-attcatattcatttttatgtttcttaatgtacaacaatgcttcctgcaccgcaaactgtcttgctccctgtgtgaagatcctggatgaaaaa |
5076655 |
T |
|
| Q |
201 |
ttcgctaagcaaaagttctgatactcatcatattgatagctagtattgtaac |
252 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
5076656 |
ttcggtaagcaaaaattctgatactcatcatactgatagctagtattgtaac |
5076707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 7412767 - 7412518
Alignment:
| Q |
2 |
aggctttattatttaagttgttgacctcattgcgaatgttgaggttgagaacaacggtatcacagctgagaatgtcaatacaagatagtgtcgtgttttt |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| ||||||||||||||| ||| ||||||||| ||||||||||||| |||||||||| ||||||| |
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| T |
7412767 |
aggctttaatatttaagttgttgacctcgttgcggatgttgaggttgagagcaagggtatcacaaatgagaatgtcaatgcaagatagtgctgtgttttg |
7412668 |
T |
|
| Q |
102 |
attgattattcatattcattcctatgtttcttaatgtacaacaatgcttcttgcaccacaaactgtgttgctccctttgtgaagatcctggatgaagaat |
201 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||| ||||| ||| | |||| |||||||| ||||||||| ||||||||||||||||||| ||| |
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| T |
7412667 |
attgat-attcatattcattcttatgtttcttaatgtacagcaatgtttcctacaccgcaaactgtcttgctccctgtgtgaagatcctggatgaaaaat |
7412569 |
T |
|
| Q |
202 |
tcgctaagcaaaagttctgatactcatcatattgatagctagtattgtaac |
252 |
Q |
| |
|
||| ||||||||| || |||||||||||||| ||||||||||||||||||| |
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|
| T |
7412568 |
tcggtaagcaaaaattatgatactcatcatactgatagctagtattgtaac |
7412518 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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