View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11360_high_1_N (Length: 546)
Name: NF11360_high_1_N
Description: NF11360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11360_high_1_N |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 39 - 544
Target Start/End: Complemental strand, 11119628 - 11119116
Alignment:
| Q |
39 |
agacataacttgtgacggaaagagaggatatactataat-----gaaaattacttagnnnnnnnnngg-ttatcttgcacacataaagcacataacatac |
132 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
11119628 |
agacataacttgtgacggaaagagaggatatactataatataatgaaaattacttagaaaaaaaaaagattatcttgcacacataaagcacataacatac |
11119529 |
T |
|
| Q |
133 |
acatcaaggcacagatgtgcctagctagcacttttctttattagtgaattccaatcaccacatgcatttcaactaaagtaacccacattcatttagattg |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119528 |
acatcaaggcacagatgtgcctagctagcacttttctttattagtgaattccaatcaccacatgcatttcaactaaagtaacccacattcatttagattg |
11119429 |
T |
|
| Q |
233 |
aactaaccatacctgggtagatt-attctgaggccacactagcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctcc |
331 |
Q |
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||||||||||| | | ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119428 |
aactaaccatatccccctccattgattctgaggtcacactagcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctcc |
11119329 |
T |
|
| Q |
332 |
tttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatg |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119328 |
tttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatg |
11119229 |
T |
|
| Q |
432 |
ctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttat |
531 |
Q |
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| T |
11119228 |
ctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtcgaatttat |
11119129 |
T |
|
| Q |
532 |
caggagttgttgg |
544 |
Q |
| |
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| ||||||||||| |
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| T |
11119128 |
cgggagttgttgg |
11119116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 142 - 544
Target Start/End: Complemental strand, 11111747 - 11111345
Alignment:
| Q |
142 |
cacagatgtgcctagctagcacttttctttattagtgaattccaatcaccacatgcatttcaactaaagtaacccacattcatttagattgaactaacca |
241 |
Q |
| |
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|||| |||||| |||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11111747 |
cacaaatgtgcttagccagcacttctctttattagtgaattccaatcaccacat----ttcatctaaagtaacccacattcatttagattgaactaacca |
11111652 |
T |
|
| Q |
242 |
tacc----tgggtagattattctgaggccacactagcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctcctttctt |
337 |
Q |
| |
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|| | | | |||| | | ||||||||| | |||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| |
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| T |
11111651 |
tatccccttccattgattctgcagaggccacaatgccaagatccaattcagaagatttcttgttaataaaattgcattgttttctaatttctcctttctt |
11111552 |
T |
|
| Q |
338 |
tccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatg |
437 |
Q |
| |
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||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| ||||| ||||||||||||||||| |
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| T |
11111551 |
tccggtaagcacatcaatattacccattttaatcattgaatttataaagttctgaaagaaaacattttggctatttgcaaagctgttgacaatgctaatg |
11111452 |
T |
|
| Q |
438 |
gtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggag |
537 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| |
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| T |
11111451 |
gtatctgcacccggtgttgagaataattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagaagttcttgtccaatgtatcaggag |
11111352 |
T |
|
| Q |
538 |
ttgttgg |
544 |
Q |
| |
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| ||||| |
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|
| T |
11111351 |
tcgttgg |
11111345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 273 - 544
Target Start/End: Original strand, 10793178 - 10793449
Alignment:
| Q |
273 |
gcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatca |
372 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||||||||| || || || ||||||||||||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
10793178 |
gcaagatctaactcagaagattttttgttaacaaaattgcattgtttccttatttctcctttctttccggtaagcacaccaatattacccattttaatca |
10793277 |
T |
|
| Q |
373 |
ttgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtc |
472 |
Q |
| |
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||| || ||||| ||| |||||| || ||||||| || ||||||| || ||||||||| ||||||||||| |||||||| |||||||||||||| |
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| T |
10793278 |
ttgctttcttaaagctctcaaagaaagcactttggttattggcaaagttattaacaatgctagtggtatctgcatttggtgttgaaaacaattcttggtc |
10793377 |
T |
|
| Q |
473 |
actttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
544 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||| |||||||||| ||| |||||||||| ||||| |
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|
| T |
10793378 |
actttgaagcaaaccctttttaacctgaagattgttgtagaagttcttgtccaatgtatcaggagtagttgg |
10793449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 299 - 544
Target Start/End: Complemental strand, 11156842 - 11156597
Alignment:
| Q |
299 |
gttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaa |
398 |
Q |
| |
|
||||||||| ||||| || |||||||| ||||||||| | || || ||||| |||||||| |||||||||||||||| | ||||| ||| |||||| |
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| T |
11156842 |
gttaacaaagttgcattgttttctaatctctcctttcgtccctgttagcacaccaatattgcccattttaatcattgcagccttaaagctctcaaagaaa |
11156743 |
T |
|
| Q |
399 |
acattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttacctt |
498 |
Q |
| |
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| ||||| | | | | || ||||||||||||||||||||||||||||| | |||||||||||| ||||| |||||||| ||||| |||||||| ||| |
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| T |
11156742 |
gcgttttgatcggtgctgaatttgttgacaatgctaatggtatctgcaccggatgttgagaacaactcttgatcactttggagcaagccctttttcactt |
11156643 |
T |
|
| Q |
499 |
gaagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
544 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||||||||| ||||| |
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|
| T |
11156642 |
gaagattggagtaatagttcttgtcaaatttatcaggagtcgttgg |
11156597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 300 - 544
Target Start/End: Complemental strand, 11137899 - 11137655
Alignment:
| Q |
300 |
ttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaa |
399 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||| || || || ||||| ||||||||||||||||||||||| | | |||| | | |||||| |
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| T |
11137899 |
ttaacaaaattgcaatgttttctaatctctccttttttcccggtcagcacaccaatattacccattttaatcatggcggcttcaaagctatcaaagaaag |
11137800 |
T |
|
| Q |
400 |
cattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttg |
499 |
Q |
| |
|
|||||| || | || ||||||||||||||||||||||| ||||| | ||| ||||| | ||||||||||| |||||||||||||||||||| || |
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|
| T |
11137799 |
catttttgtcagcactgaacttgttgacaatgctaatggtatcagcaccagatgtcgagaaaagctcttggtcactctgaagcaaaccctttttaccctg |
11137700 |
T |
|
| Q |
500 |
aagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
544 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||| ||||| |
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|
| T |
11137699 |
aagattggagtagtagttcttgtcaaatttatcaggagtcgttgg |
11137655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 415 - 544
Target Start/End: Complemental strand, 11146089 - 11145960
Alignment:
| Q |
415 |
caaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagta |
514 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | |||||||||||| ||||| ||||||||||||||||| ||||| |||||||||| ||| || |
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|
| T |
11146089 |
caaagttgttgacaatgctaatggtatcagcaccagatgttgagaacaactcttgatcactttgaagcaaaccttttttcacttgaagattagagtaata |
11145990 |
T |
|
| Q |
515 |
gttcttgtctaatttatcaggagttgttgg |
544 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |
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|
| T |
11145989 |
gttcttgtcaaatttatcaggagtagttgg |
11145960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 300 - 544
Target Start/End: Complemental strand, 11150173 - 11149929
Alignment:
| Q |
300 |
ttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaa |
399 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||||| || ||||| | ||| |||||||| |||||||| ||||| | | ||||| ||| || ||| |
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|
| T |
11150173 |
ttaacaaagttgcattgttttctaatctctccttgtttcccagttaacacaccaatatttcccattttgatcatagcagccttaaagctctcaaaaaaag |
11150074 |
T |
|
| Q |
400 |
cattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttg |
499 |
Q |
| |
|
| ||||| | | || |||| ||||||||||||||||||||||||| ||| | |||||||||||| ||||| |||||||| |||||||||||||| |||| |
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|
| T |
11150073 |
ctttttgatcggttgcaaatttgttgacaatgctaatggtatctgaaccagatgttgagaacaactcttgatcactttggagcaaaccctttttcacttg |
11149974 |
T |
|
| Q |
500 |
aagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
544 |
Q |
| |
|
|||||| ||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
11149973 |
aagattagagtaatagttcttgtcaaatttatcaggagtcgttgg |
11149929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 492
Target Start/End: Original strand, 11183613 - 11183671
Alignment:
| Q |
434 |
aatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttt |
492 |
Q |
| |
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||||||||| ||||| ||||| || ||||||||||||||||| |||| ||| ||||||| |
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|
| T |
11183613 |
aatggtatcagcaccaggtgtggaaaacaattcttggtcactctgaaacaacccctttt |
11183671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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