View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11360_high_4 (Length: 394)
Name: NF11360_high_4
Description: NF11360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11360_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 112 - 333
Target Start/End: Original strand, 33756985 - 33757206
Alignment:
| Q |
112 |
gtgaaagttagttatggcgacggagcaaccaccggtgacacttccggcatccgtagaaaatctaataaaccaaatatgcgtgaaacaatcacagccacca |
211 |
Q |
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| T |
33756985 |
gtgaaagtttgttatggcgacggagcaaccaccggtgacacttccggcatccgtagaaaatctaataaaccaaatatgcgtgaaacaatcacaaccacca |
33757084 |
T |
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| Q |
212 |
ctcgatccttcaacgatacgactcctcgcaacgatggcagaaaatcaagctcttcaaatcctcaatgttatttccaatacaccaattcgaaccactttta |
311 |
Q |
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| T |
33757085 |
ctcgatccttcaacgatacgactcctcgcaacgatggcagaaaatcaagctcttcaaattctcaatgttatttccaatacaccaattcgaaccactttta |
33757184 |
T |
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| Q |
312 |
atgctttcactctcttcatgat |
333 |
Q |
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| T |
33757185 |
atgctttcactctcttcatgat |
33757206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 358 - 394
Target Start/End: Original strand, 33757228 - 33757264
Alignment:
| Q |
358 |
acaatcaccgtcaccgtcacagtcatttccgttaccg |
394 |
Q |
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| T |
33757228 |
acaatcaccgtcacagtcacagtcatttccattaccg |
33757264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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