View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11360_high_6 (Length: 356)
Name: NF11360_high_6
Description: NF11360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11360_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 3001756 - 3002011
Alignment:
| Q |
1 |
tcaatacgtaagctactgcagttttttgtgcaatgtctaaattgt-gccgctacggaaatattttactagcatgcgttggttatgaatatgaatataatg |
99 |
Q |
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| T |
3001756 |
tcaatacgtaagctactgcagttttttgtgcaatgtctaaattgttgccactacggaaatattttactagcatgtgttggttatgaatatgaatataatg |
3001855 |
T |
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| Q |
100 |
tgctttgacatctgctgctgtacaatataatgattgatatctaatgatatattgtactaaatgggatagtaatactatttaaaggttgcataaacggtaa |
199 |
Q |
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| T |
3001856 |
tgctttggcatctgctgctgcacaatataatgattg-tatgtaatgatatattatactaaatgggatagtaatactatttaaaggttgcataaatggtaa |
3001954 |
T |
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| Q |
200 |
ttgctgcagtttcttgtccaaactttatgac-attgacttgtttttacagagttatc |
255 |
Q |
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| T |
3001955 |
ttgctgcagtttcttgtccaaactttatgacttttgacttgtttttacatagttatc |
3002011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 271 - 340
Target Start/End: Original strand, 16895055 - 16895126
Alignment:
| Q |
271 |
taaacccagttgaatcatgcagtatacacatt--gggtctaaaatgttttctcttccccaaaaggaaaagta |
340 |
Q |
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| T |
16895055 |
taaacccaattgaatcatgcagtatacatattatgggtctaaaatgttttctcttccccaaagggaaaagta |
16895126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 32706958 - 32707096
Alignment:
| Q |
1 |
tcaatacgtaagctactgcagttttttgtgcaatgtctaaattgtgccgctacggaaatattttactagcatgcgttggttatgaatatgaatataatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32706958 |
tcaatacgtaagctactgcagttttttgtgcaatgtctaaattgtgccgctacggaaatattttactagcatgcgttggttatgaatatgaatataatgt |
32707057 |
T |
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| Q |
101 |
gctttgacatctgctgctgtacaatataatgattgatat |
139 |
Q |
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||||| ||||||||||||| ||||||||||||||||||| |
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| T |
32707058 |
gcttttacatctgctgctgcacaatataatgattgatat |
32707096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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