View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11360_high_7 (Length: 332)
Name: NF11360_high_7
Description: NF11360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11360_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 28783466 - 28783194
Alignment:
| Q |
20 |
aacctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcctcctgttccagtcaagaaacc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28783466 |
aacctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcctcctgttccagtcaagaaacc |
28783367 |
T |
|
| Q |
120 |
atgtccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaacctcctccagttccaaagccacaaccaccaccggttccggtcaag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28783366 |
atgtccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaacctcctccagttccaaagccacaaccaccaccggttccggtcaag |
28783267 |
T |
|
| Q |
220 |
aaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccacaggttc |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28783266 |
aaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccaccggttc |
28783194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 103 - 285
Target Start/End: Complemental strand, 28783278 - 28783099
Alignment:
| Q |
103 |
gttccagtcaagaaaccatgtccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaacctcctccagttccaaagccacaaccac |
202 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| || ||||||||| ||| |||| |
|
|
| T |
28783278 |
gttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccaccggttccaaaggcacttccac |
28783179 |
T |
|
| Q |
203 |
caccggttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctcca |
285 |
Q |
| |
|
|||| || ||| |||||||||||||||| ||||||| |||| || |||||| |||||||||||||| |||| || |||||| |
|
|
| T |
28783178 |
caccagtcccgatcaagaaaccatgtcc---accaaagattgagcacccagttctaccacctgttccaatatataagcctcca |
28783099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 28783532 - 28783448
Alignment:
| Q |
20 |
aacctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcctcctgt |
104 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| |
|
|
| T |
28783532 |
aacctcttcctccgcctgtgcctgtttaccataaacctctccctccacctacacctgtgtatgagaaacctcttcctccacctgt |
28783448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 28783624 - 28783553
Alignment:
| Q |
27 |
tcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcc |
98 |
Q |
| |
|
|||||||||||||||| | ||| | |||||| ||||||| ||||| ||||| ||| | |||||||||||||| |
|
|
| T |
28783624 |
tcctccacctgtgcctatctatgaaaaacctatccctcctcctacacctgtttatgagaaacctcttcctcc |
28783553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 28783499 - 28783421
Alignment:
| Q |
20 |
aacctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcc |
98 |
Q |
| |
|
||||||| ||||||||| ||||| ||| | |||||||| ||||||||| |||||| |||||||||||||| ||||| |
|
|
| T |
28783499 |
aacctctccctccacctacacctgtgtatgagaaacctcttcctccacctgtgcctgtttatcataaacctctccctcc |
28783421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 28783578 - 28783514
Alignment:
| Q |
40 |
cctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcctcctgt |
104 |
Q |
| |
|
||||||||| | |||||||| ||||||||||| ||||| || | |||||||||||||| ||||| |
|
|
| T |
28783578 |
cctgtttatgagaaacctcttcctccacctacacctgtctacgagaaacctcttcctccgcctgt |
28783514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University