View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11361_high_2 (Length: 494)
Name: NF11361_high_2
Description: NF11361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11361_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 484
Target Start/End: Original strand, 24255362 - 24255856
Alignment:
| Q |
18 |
acatagtgccaacaaatggagcctaaattagttaatacatgtaagca----ttgttatagtgaattaattaaattctttgaaccctatttgagattggtc |
113 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24255362 |
acatagtgcctacaaatggagcctaaattagttaataccgataagcgagttttgttatagtgaattaattaaattctttgaaccctatttgaggttggt- |
24255460 |
T |
|
| Q |
114 |
tagtggttggc-----------------attcatctgaaaatcacatattcgattctaaaaatggtcaatttcatactgctttgcaatgattttaaatga |
196 |
Q |
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||||||||||| |||| ||| |||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||| |
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| T |
24255461 |
tagtggttggcttgagatgttggagtgtattcctctcaaaatcacatattcgattctctctatggtcaatttcataccgctttacaatgattttaaatga |
24255560 |
T |
|
| Q |
197 |
gttccacaagtgggggcgggattgagat-------cgtgtatttttctatccgttctatattgaattttgctactctaacacagttcacacatccacttc |
289 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24255561 |
gttccacaagtgggggcgggattgagattgtataccgtgtgtttttctatcccttctatattgaattttgctactctaacacagttcacacatccacttc |
24255660 |
T |
|
| Q |
290 |
nnnnnnnnnnnnnnnnnnngctttaatgcaccttcaccatactcatgcatccaaattggaaaaacgnnnnnnn-ctcttctattgaatcatttttcttga |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24255661 |
ttttttattattattttttgctttaatgcaccttcaccatactcatgcatccaaattggaaaaacgttttctttctcttctattgaatcatttttcttga |
24255760 |
T |
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| Q |
389 |
attaaaatatttggatgagaagaaaaagacccaagtttttgaagtctaaacacactaattgttacccgannnnnnncattcacaatagttcctatg |
484 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
24255761 |
attaaaatatttggatgagaagaaaaagacccaggtttttgaagtctaaacacaataattgttacccgatttttttcattcacaatagttcctatg |
24255856 |
T |
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