View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11361_low_1 (Length: 658)
Name: NF11361_low_1
Description: NF11361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11361_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 483; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 38752487 - 38751989
Alignment:
| Q |
1 |
taatcaaacctagtgtattctttgtgaataagaggtgttgctctaatagaaagagagtgatagaggttattttaaactcggtggtgcattagtgaatgag |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
38752487 |
taatcaaacctagtgtattcattgtgaataagaggtgttgctctaatagaaagagagtgagagaggttattttaaacttggtggtgcattagtgaatgag |
38752388 |
T |
|
| Q |
101 |
taagagaatactataacataacaaagcataaaattagataagtagcacaaaagtctttggtttagtgtgatggctttcacattagagaggtgtgaagata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752387 |
taagagaatactataacataacaaagcataaaattagataagtagcacaaaagtctttggtttagtgtgatggctttcacattagagaggtgtgaagata |
38752288 |
T |
|
| Q |
201 |
acatggtgttcactatggagtctcagaaatcagtgcctgctcctttcttgacaaagacataccaacttgttgatgatcctctcactgaccacattgtatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752287 |
acatggtgttcactatggagtctcagaaatcagtgcctgctcctttcttgacaaagacataccaacttgttgatgatcctctcactgaccacattgtatc |
38752188 |
T |
|
| Q |
301 |
ttggagtgatgatgaaactacatttgttgtttggaggcctcctgagtttgctagagatcttcttcccaattttttcaagcataacaacttctcaagcttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752187 |
ttggagtgatgatgaaactacatttgttgtttggaggcctcctgagtttgctagagatcttcttcccaattttttcaagcataacaacttctcaagcttt |
38752088 |
T |
|
| Q |
401 |
gttaggcaactaaatacatatgtgagaatcttcaaattctaacttctatgttctctatatccttattcattgttttagtaagtatcttctttagttagt |
499 |
Q |
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| T |
38752087 |
gttaggcaactaaatacatatgtgagaatcttcaaattctaacttctatgttctatatatccttattcattgttttagtaagtatcttctttagttagt |
38751989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 523 - 643
Target Start/End: Complemental strand, 38751924 - 38751804
Alignment:
| Q |
523 |
ttctataagctcttcaaaacagtttcgcaagctatgaagcactgacaataatttgagaaaatgtaacaacagaatacagtcacatgtatcgatgttgtgt |
622 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38751924 |
ttctataagcttttcaaaacagtttcgcaagctatgaagcactgacaataatttgagaaaatgtaacaacggaatacagtcacatgtatcgatgttgtgt |
38751825 |
T |
|
| Q |
623 |
tggtgtctgatgcgtgtcttc |
643 |
Q |
| |
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| T |
38751824 |
tggtgtctgatgcgtgtcttc |
38751804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 399
Target Start/End: Complemental strand, 12478780 - 12478731
Alignment:
| Q |
350 |
gctagagatcttcttcccaattttttcaagcataacaacttctcaagctt |
399 |
Q |
| |
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|||||||| ||||| || || ||||||||||||||||| ||||||||||| |
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| T |
12478780 |
gctagagaccttctgccgaagtttttcaagcataacaatttctcaagctt |
12478731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 516 - 643
Target Start/End: Original strand, 3020507 - 3020634
Alignment:
| Q |
516 |
aagttatttctataagctcttcaaaacagtttcgcaagctatgaagcactgacaataatttgagaaaatgtaacaacagaatacagtcacatgtatcgat |
615 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||| | ||||| ||||||||||||| || |
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| T |
3020507 |
aagttatttatataagctcttcaaaacagtttcgcaagctatgaagcactcataataatttgagaaaatggaacagcggaataaagtcacatgtatcaat |
3020606 |
T |
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| Q |
616 |
gttgtgttggtgtctgatgcgtgtcttc |
643 |
Q |
| |
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|| ||||||||||||||||||||||||| |
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| T |
3020607 |
gtcgtgttggtgtctgatgcgtgtcttc |
3020634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 227 - 399
Target Start/End: Complemental strand, 46927245 - 46927073
Alignment:
| Q |
227 |
aaatcagtgcctgctcctttcttgacaaagacataccaacttgttgatgatcctctcactgaccacattgtatcttggagtgatgatgaaactacatttg |
326 |
Q |
| |
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|||||||| || ||||| ||| | || || ||||||||||||||||||||||| ||| || ||||| || |||||| |||| ||||| | || || | |
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| T |
46927245 |
aaatcagtcccagctccattcctcaccaaaacataccaacttgttgatgatccagccacagatcacatcgtttcttggggtgaagatgactccaccttcg |
46927146 |
T |
|
| Q |
327 |
ttgtttggaggcctcctgagtttgctagagatcttcttcccaattttttcaagcataacaacttctcaagctt |
399 |
Q |
| |
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|||||||| | |||||||| ||||||||||| || || || || | ||||| || ||||||||||| ||||| |
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| T |
46927145 |
ttgtttggcgtcctcctgaatttgctagagacctcctccctaactacttcaaacacaacaacttctctagctt |
46927073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 585
Target Start/End: Original strand, 31815642 - 31815675
Alignment:
| Q |
552 |
agctatgaagcactgacaataatttgagaaaatg |
585 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |
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|
| T |
31815642 |
agctatgaagcactgataataatttgagaaaatg |
31815675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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