View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11361_low_10 (Length: 243)
Name: NF11361_low_10
Description: NF11361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11361_low_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 2800550 - 2800764
Alignment:
| Q |
18 |
atagtttctaccttgaggaagttgttgtcacttgtcacatctaaactttgagtaatgtccttaaaatggaatttcctctcctagttgcttaagtatttgg |
117 |
Q |
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| T |
2800550 |
atagtttctaccttgaggaagttgttgt-------cacatctaaactttgggtaatgtccttaaaatggaatttcctctcctagttgcttaagtatttgg |
2800642 |
T |
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| Q |
118 |
tttcaagttgttgttgtttccacataaaagaaagagatttgaagtcaggaaagttgagaagtcaagttattaataaacttaataattaaaagttgttgat |
217 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800643 |
tttcaagttgttgttgtttccacataaaagaa----atttgaagtcaggaaagttgagaagtcaagttattaataaacttaataattaaaagttgttgat |
2800738 |
T |
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| Q |
218 |
gcgacaaattgtgagttggaataaat |
243 |
Q |
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|||||||||||||||||||||||||| |
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| T |
2800739 |
gcgacaaattgtgagttggaataaat |
2800764 |
T |
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